Astumian R D, Bier M
Department of Surgery, University of Chicago, Illinois 60637, USA.
Biophys J. 1996 Feb;70(2):637-53. doi: 10.1016/S0006-3495(96)79605-4.
The typical biochemical paradigm for coupling between hydrolysis of ATP and the performance of chemical or mechanical work involves a well-defined sequence of events (a kinetic mechanism) with a fixed stoichiometry between the number of ATP molecules hydrolyzed and the turnover of the output reaction. Recent experiments show, however, that such a deterministic picture of coupling may not be adequate to explain observed behavior of molecular motor proteins in the presence of applied forces. Here we present a general model in which the binding of ATP and release of ADP serve to modulate the binding energy of a motor protein as it travels along a biopolymer backbone. The mechanism is loosely coupled--the average number of ATPs hydrolyzed to cause a single step from one binding site to the next depends strongly on the magnitude of an applied force and on the effective viscous drag force. The statistical mechanical perspective described here offers insight into how local anisotrophy along the "track" for a molecular motor, combined with an energy-releasing chemical reaction to provide a source of nonequilibrium fluctuations, can lead to macroscopic motion.
ATP水解与化学或机械功执行之间耦合的典型生化范式涉及一系列明确的事件(动力学机制),水解的ATP分子数量与输出反应的周转之间具有固定的化学计量关系。然而,最近的实验表明,这种确定性的耦合图景可能不足以解释在施加力的情况下分子运动蛋白的观察行为。在这里,我们提出了一个通用模型,其中ATP的结合和ADP的释放用于调节运动蛋白沿着生物聚合物主链移动时的结合能。该机制是松散耦合的——水解ATP以实现从一个结合位点到下一个结合位点的单步移动的平均数量强烈依赖于施加力的大小和有效粘性阻力。这里描述的统计力学观点有助于深入了解分子运动蛋白沿着“轨道”的局部各向异性如何与释放能量的化学反应相结合,以提供非平衡涨落的来源,从而导致宏观运动。