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研究RNA编辑的机制和原理。

Investigating the mechanism and machinery of RNA editing.

作者信息

Stuart K, Kable M L, Allen T E, Lawson S

机构信息

Seattle Biomedical Research Institute, Washington 98109-1651, USA.

出版信息

Methods. 1998 May;15(1):3-14. doi: 10.1006/meth.1998.0601.

DOI:10.1006/meth.1998.0601
PMID:9614648
Abstract

RNA editing in trypanosomes produces mature mRNAs by posttranscriptional guide RNA (gRNA)-directed uridylate insertion and deletion. This article describes methods for the study of RNA editing with an emphasis on an in vitro editing system that was used to explore the general mechanism of editing and that can be adapted for more in-depth studies of this intriguing and important process. Methods used to investigate the macromolecular complex that catalyzes RNA editing are also described. This complex is composed of multiple proteins and contains several catalytic activities. It is in the early stages of characterization. The methods described here are intended to assist in its further analysis.

摘要

锥虫中的RNA编辑通过转录后引导RNA(gRNA)指导的尿苷酸插入和缺失产生成熟的mRNA。本文介绍了RNA编辑的研究方法,重点介绍了一种体外编辑系统,该系统用于探索编辑的一般机制,并且可用于对这一有趣且重要的过程进行更深入的研究。文中还描述了用于研究催化RNA编辑的大分子复合物的方法。该复合物由多种蛋白质组成,并具有多种催化活性。其表征尚处于早期阶段。这里描述的方法旨在帮助对其进行进一步分析。

相似文献

1
Investigating the mechanism and machinery of RNA editing.研究RNA编辑的机制和原理。
Methods. 1998 May;15(1):3-14. doi: 10.1006/meth.1998.0601.
2
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The 3'-untranslated region of cytochrome oxidase II mRNA functions in RNA editing of African trypanosomes exclusively as a cis guide RNA.细胞色素氧化酶II信使核糖核酸的3'非翻译区在非洲锥虫的核糖核酸编辑中仅作为顺式引导核糖核酸发挥作用。
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Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization.锥虫RNA编辑介导复合物蛋白在引导RNA利用方面具有不同功能。
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The specificity of nucleotide removal during RNA editing in Trypanosoma brucei.布氏锥虫RNA编辑过程中核苷酸去除的特异性。
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RNA editing in Trypanosoma brucei: characterization of gRNA U-tail interactions with partially edited mRNA substrates.布氏锥虫中的RNA编辑:引导RNA的U尾与部分编辑的mRNA底物相互作用的特征
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Association of guide RNA binding protein gBP21 with active RNA editing complexes in Trypanosoma brucei.布氏锥虫中引导RNA结合蛋白gBP21与活性RNA编辑复合体的关联
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Kinetoplastid RNA editing: complexes and catalysts.
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RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro.RNA编辑:体外遗传信息从引导RNA转移至前体信使RNA
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Trypanosome RNA editing: simple guide RNA features enhance U deletion 100-fold.锥虫RNA编辑:简单的引导RNA特征使U缺失增强100倍。
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引用本文的文献

1
Trypanosomatid, fluorescence-based U-insertion/U-deletion RNA-editing (FIDE).基于荧光的锥虫属U插入/U缺失RNA编辑(FIDE)
Bio Protoc. 2021 Mar 5;11(5):e3935. doi: 10.21769/BioProtoc.3935.
2
Analyzing editosome function in high-throughput.高通量分析编辑体功能
Nucleic Acids Res. 2020 Sep 25;48(17):e99. doi: 10.1093/nar/gkaa658.
3
A fluorescence-based reporter substrate for monitoring RNA editing in trypanosomatid pathogens.基于荧光的报道底物,用于监测原生动物病原体中的 RNA 编辑。
Nucleic Acids Res. 2010 Jul;38(13):e138. doi: 10.1093/nar/gkq333. Epub 2010 May 5.
4
Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei.布氏锥虫编辑体及其他多蛋白复合物的质谱分析
J Am Soc Mass Spectrom. 2003 Jul;14(7):728-35. doi: 10.1016/S1044-0305(03)00126-0.
5
Role of uridylate-specific exoribonuclease activity in Trypanosoma brucei RNA editing.尿苷酸特异性外切核糖核酸酶活性在布氏锥虫RNA编辑中的作用
Eukaryot Cell. 2002 Feb;1(1):112-8. doi: 10.1128/EC.1.1.112-118.2002.
6
RNA sequence and base pairing effects on insertion editing in Trypanosoma brucei.RNA序列和碱基配对对布氏锥虫插入编辑的影响。
Mol Cell Biol. 2002 Mar;22(5):1567-76. doi: 10.1128/MCB.22.5.1567-1576.2002.
7
Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing.尿苷酸添加和RNA连接有助于动基体插入RNA编辑的特异性。
Mol Cell Biol. 2000 Nov;20(22):8447-57. doi: 10.1128/MCB.20.22.8447-8457.2000.
8
Evolution of RNA editing in trypanosome mitochondria.锥虫线粒体中RNA编辑的进化
Proc Natl Acad Sci U S A. 2000 Jun 20;97(13):6986-93. doi: 10.1073/pnas.97.13.6986.
9
Kinetoplastid RNA editing does not require the terminal 3' hydroxyl of guide RNA, but modifications to the guide RNA terminus can inhibit in vitro U insertion.动质体RNA编辑不需要引导RNA的3'末端羟基,但对引导RNA末端的修饰可抑制体外尿苷插入。
RNA. 1999 Jul;5(7):883-92. doi: 10.1017/s1355838299990453.