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未鉴定的人类基因编码序列的预测。IX. 来自大脑的100个新的cDNA克隆的完整序列,这些克隆在体外可编码大蛋白。

Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro.

作者信息

Nagase T, Ishikawa K, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O

机构信息

Kazusa DNA Research Institute, Kisarazu, Chiba, Japan.

出版信息

DNA Res. 1998 Feb 28;5(1):31-9. doi: 10.1093/dnares/5.1.31.

Abstract

As an extension of a series of projects for sequencing human cDNA clones derived from relatively long transcripts, we herein report the entire sequences of 100 newly determined cDNA clones with the potential of coding for large proteins in vitro. The cDNA clones were isolated from size-fractionated human brain cDNA libraries with insert sizes between 4.5 and 8.3 kb. The sequencing of these clones revealed that the average size of the cDNA inserts and of their open reading frames was 5.3 kb and 2.8 kb (930 amino acid residues), respectively. Homology search against public databases indicated that the predicted coding sequences of 86 clones exhibited significant similarities to known genes; 51 of them (59%) were related to those for cell signaling/communication, nucleic acid management, and cell structure/motility. All the clones characterized in this study are accompanied by their expression profiles in 14 human tissues examined by reverse transcription-coupled polymerase chain reaction and the chromosomal mapping data.

摘要

作为一系列用于对源自相对较长转录本的人类cDNA克隆进行测序的项目的延伸,我们在此报告100个新测定的cDNA克隆的完整序列,这些克隆具有在体外编码大蛋白的潜力。这些cDNA克隆是从插入片段大小在4.5至8.3 kb之间的大小分级人类脑cDNA文库中分离出来的。对这些克隆的测序表明,cDNA插入片段及其开放阅读框的平均大小分别为5.3 kb和2.8 kb(930个氨基酸残基)。对公共数据库的同源性搜索表明,86个克隆的预测编码序列与已知基因具有显著相似性;其中51个(59%)与细胞信号传导/通讯、核酸管理和细胞结构/运动相关的基因有关。本研究中鉴定的所有克隆都伴有它们在通过逆转录偶联聚合酶链反应检测的14种人类组织中的表达谱以及染色体定位数据。

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