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一种用于鉴定盘基网柄菌基因组中质粒插入情况的快速、小规模方法。

A rapid, small scale method for characterization of plasmid insertions in the Dictyostelium genome.

作者信息

Barth C, Fraser D J, Fisher P R

机构信息

School of Microbiology, La Trobe University, Bundoora 3083, Melbourne, Australia.

出版信息

Nucleic Acids Res. 1998 Jul 1;26(13):3317-8. doi: 10.1093/nar/26.13.3317.

DOI:10.1093/nar/26.13.3317
PMID:9628938
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC147678/
Abstract

A rapid, simple method for characterization of plasmid insertions in the Dictyostelium discoideum genome was developed. It is based on the capability of linear plasmid multimers in the insertions to recircularize efficiently in Escherichia coli cells. This recombinational recircularization of plasmid multimers provides a highly sensitive and reliable tool for determining whether individual Dictyostelium transformants resulted from restriction enzyme-mediated integration (REMI) or from recombinational integration of plasmid (RIP). The method also reveals any rearrangements in RIP insertions and provides an estimate of the vector copy number in any particular transformant.

摘要

开发了一种快速、简单的方法来鉴定盘基网柄菌基因组中的质粒插入情况。该方法基于插入片段中的线性质粒多聚体在大肠杆菌细胞中高效环化的能力。质粒多聚体的这种重组环化提供了一种高度灵敏且可靠的工具,用于确定单个盘基网柄菌转化体是由限制酶介导的整合(REMI)产生的,还是由质粒的重组整合(RIP)产生的。该方法还能揭示RIP插入中的任何重排情况,并估算任何特定转化体中的载体拷贝数。

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A rapid, small scale method for characterization of plasmid insertions in the Dictyostelium genome.一种用于鉴定盘基网柄菌基因组中质粒插入情况的快速、小规模方法。
Nucleic Acids Res. 1998 Jul 1;26(13):3317-8. doi: 10.1093/nar/26.13.3317.
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Co-insertional replication is responsible for tandem multimer formation during plasmid integration into the Dictyostelium genome.共插入复制负责在质粒整合到盘基网柄菌基因组过程中形成串联多聚体。
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本文引用的文献

1
Efficient circularization in Escherichia coli of linear plasmid multimers from Dictyostelium discoideum genomic DNA.从盘基网柄菌基因组DNA中获得的线性质粒多聚体在大肠杆菌中的高效环化。
Plasmid. 1996 Sep;36(2):86-94. doi: 10.1006/plas.1996.0036.
2
DNA-mediated transformation in Dictyostelium discoideum: regulated expression of an actin gene fusion.盘基网柄菌中的DNA介导转化:肌动蛋白基因融合的调控表达
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A mini-screen technique for analyzing nuclear DNA from a single Dictyostelium colony.一种用于分析单个盘基网柄菌菌落核DNA的微量筛选技术。
Nucleic Acids Res. 1988 Mar 25;16(5):2338. doi: 10.1093/nar/16.5.2338.
4
High efficiency transformation of E. coli by high voltage electroporation.通过高压电穿孔实现大肠杆菌的高效转化。
Nucleic Acids Res. 1988 Jul 11;16(13):6127-45. doi: 10.1093/nar/16.13.6127.
5
Developmental regulation of Dictyostelium discoideum actin gene fusions carried on low-copy and high-copy transformation vectors.携带低拷贝和高拷贝转化载体的盘基网柄菌肌动蛋白基因融合体的发育调控
Mol Cell Biol. 1986 Nov;6(11):3973-83. doi: 10.1128/mcb.6.11.3973-3983.1986.
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Homologous recombination and the repair of double-strand breaks during cotransformation of Dictyostelium discoideum.盘基网柄菌共转化过程中的同源重组与双链断裂修复
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7
Library-independent cloning of genomic fragments adjacent to vector integration sites: isolation of the EB4-PSV gene from a Dictyostelium gene disruption transformant.与载体整合位点相邻的基因组片段的非文库克隆:从盘基网柄菌基因破坏转化体中分离EB4-PSV基因。
Biochem Biophys Res Commun. 1991 Dec 16;181(2):884-8. doi: 10.1016/0006-291x(91)91273-f.
8
Tagging developmental genes in Dictyostelium by restriction enzyme-mediated integration of plasmid DNA.通过限制酶介导的质粒DNA整合在盘基网柄菌中标记发育基因。
Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8803-7. doi: 10.1073/pnas.89.18.8803.