Schmid S I, Hearing P
Department of Molecular Genetics and Microbiology, Health Sciences Center, State University of New York at Stony Brook, Stony Brook, New York 11794, USA.
J Virol. 1998 Aug;72(8):6339-47. doi: 10.1128/JVI.72.8.6339-6347.1998.
Adenovirus type 5 DNA packaging is initiated from the left end of the viral genome and depends on the presence of a cis-acting packaging domain located between nucleotides 194 and 380. Multiple redundant packaging elements (termed A repeats I through VII [AI through AVII]) are contained within this domain and display differential abilities to support DNA packaging in vivo. The functionally most important repeats, AI, AII, AV, and AVI, follow a bipartite consensus motif exhibiting AT-rich and CG-rich core sequences. Results from previous mutational analyses defined a fragment containing AV, AVI, and AVII as a minimal packaging domain in vivo, which supports a functional independence of the respective cis-acting sequences. Here we describe multimeric versions of individual packaging elements as minimal packaging domains that can confer viability and packaging activity to viruses carrying gross truncations within their left end. These mutant viruses directly rate the functional role that different packaging elements play relative to each other. The A repeats are likely to be binding sites for limiting, trans-acting packaging factors of cellular and/or viral origin. We report here the characterization of two cellular binding activities interacting with all of the minimal packaging domains in vitro, an unknown binding activity termed P-complex, and the transcription factor chicken ovalbumin upstream promoter transcription factor. The binding of both activities is dependent on the integrity of the AT-rich, but not the CG-rich, consensus half site. In the case of P-complex, binding affinity for different minimal packaging domains in vitro correlates well with their abilities to support DNA packaging in vivo. Interestingly, P-complex interacts not only with packaging elements but also with the left terminus of the viral genome, the core origin of replication. Our data implicate cellular factors as components of the viral packaging machinery. The dual binding specificity of P-complex for packaging and replication sequences may further suggest a direct involvement of left-end replication sequences in viral DNA encapsidation.
5型腺病毒DNA包装从病毒基因组左端起始,且依赖于位于核苷酸194至380之间的顺式作用包装结构域的存在。该结构域内包含多个冗余的包装元件(称为A重复序列I至VII [AI至AVII]),并在体内显示出不同的支持DNA包装的能力。功能上最重要的重复序列AI、AII、AV和AVI遵循一个二分共有基序,呈现富含AT和富含CG的核心序列。先前突变分析的结果确定了一个包含AV、AVI和AVII的片段作为体内最小包装结构域,这支持了各个顺式作用序列的功能独立性。在此,我们描述了单个包装元件的多聚体形式作为最小包装结构域,其可为在左端携带大片段截短的病毒赋予生存能力和包装活性。这些突变病毒直接评估了不同包装元件相对于彼此所起的功能作用。A重复序列可能是细胞和/或病毒来源的限制性反式作用包装因子的结合位点。我们在此报告了两种在体外与所有最小包装结构域相互作用的细胞结合活性的特征,一种未知的结合活性称为P复合物,以及转录因子鸡卵清蛋白上游启动子转录因子。这两种活性的结合均依赖于富含AT而非富含CG的共有半位点的完整性。就P复合物而言,其在体外对不同最小包装结构域的结合亲和力与其在体内支持DNA包装的能力密切相关。有趣的是,P复合物不仅与包装元件相互作用,还与病毒基因组的左端,即核心复制起点相互作用。我们的数据表明细胞因子是病毒包装机制的组成部分。P复合物对包装和复制序列的双重结合特异性可能进一步表明左端复制序列直接参与病毒DNA的衣壳化。