Xu G Y, McDonagh T, Yu H A, Nalefski E A, Clark J D, Cumming D A
Small Molecule Drug Discovery, Genetics Institute, 87 Cambridge Park Drive, Cambridge, MA 02140, USA.
J Mol Biol. 1998 Jul 17;280(3):485-500. doi: 10.1006/jmbi.1998.1874.
The amino-terminal, 138 amino acid C2 domain of cytosolic phospholipase A2 (cPLA2-C2) mediates an initial step in the production of lipid mediators of inflammation: the Ca2+-dependent translocation of the enzyme to intracellular membranes with subsequent liberation of arachidonic acid. The high resolution solution structure of this Ca2+-dependent, lipid-binding domain (CaLB) has been determined using heteronuclear three-dimensional NMR spectroscopy. Secondary structure analysis, derived from several sets of spectroscopic data, shows that the domain is composed of eight antiparallel beta-strands with six interconnecting loops that fits the "type II" topology for C2 domains. Using a total of 2370 distance and torsional restraints, the structure was found to be a beta-sandwich in the "Greek key" motif. The solution structure of cPLA2-C2 domain is very similar to the X-ray crystal structure of the C2 domain of phospholipase-C-delta and phylogenetic analysis clarifies the structural role of highly conserved residues. Calorimetric studies further demonstrate that cPLA2-C2 binds two Ca2+ with observed Kds of approximately 2 microM in an entropically assisted process. Moreover, regions on cPLA2-C2 interacting with membranes were identified by 15N-HSQC-spectroscopy of cPLA2-C2 in the presence of low molecular weight lipid micelles. An extended binding site was identified that binds the phosphocholine headgroup in a Ca2+-dependent manner and also interacts with proximal regions of the membrane surface. Based upon these results, a structural model is presented for the mechanism of association of cPLA2 with its membrane substrate.
胞质型磷脂酶A2(cPLA2)的氨基末端138个氨基酸的C2结构域介导了炎症脂质介质产生的初始步骤:该酶依赖钙离子向细胞内膜的转位,随后花生四烯酸被释放。利用异核三维核磁共振光谱法确定了这个依赖钙离子的脂质结合结构域(CaLB)的高分辨率溶液结构。从几组光谱数据得出的二级结构分析表明,该结构域由八条反平行β链和六个相互连接的环组成,符合C2结构域的“II型”拓扑结构。使用总共2370个距离和扭转约束,发现该结构是“希腊钥匙”基序中的β折叠三明治结构。cPLA2 - C2结构域的溶液结构与磷脂酶C - δ的C2结构域的X射线晶体结构非常相似,系统发育分析阐明了高度保守残基的结构作用。量热研究进一步表明,cPLA2 - C2在一个熵辅助过程中结合两个钙离子,观察到的解离常数约为2微摩尔。此外,通过在低分子量脂质微团存在下对cPLA2 - C2进行15N - HSQC光谱,确定了cPLA2 - C2与膜相互作用的区域。确定了一个延伸的结合位点,它以钙离子依赖的方式结合磷酸胆碱头部基团,并且还与膜表面的近端区域相互作用。基于这些结果,提出了一个cPLA2与其膜底物结合机制的结构模型。