Aoki M, Ishimori K, Morishima I
Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Kyoto 606-8501, Japan.
Biochim Biophys Acta. 1998 Jul 28;1386(1):157-67. doi: 10.1016/s0167-4838(98)00094-6.
To investigate the interaction of putidaredoxin (Pdx) with its redox partners in the cytochrome P450cam system, we focused on the role of negatively charged surface amino acid residues. The amino acid residues we examined in this mutational study are Asp-58, Glu-65, Glu-72, and Glu-77, which are located on the alpha-helical segment to form a negatively charged region on the surface of Pdx and have been supposed to play key roles in the association with the redox partners, NADH-putidaredoxin reductase (PdR) and P450cam. The neutralization of the single negative charge on these amino acid residues did not significantly inhibit the electron-transfer reaction with the redox partners, except for the mutation at Glu-72. Together with the previous results, we can conclude that the negatively charged cluster on the alpha-helical segment is not so crucial for the electron transfer of the Pdx/PdR complex, and, instead of the negative charges, the steric hindrance is essential for the binding of Pdx with PdR. In the electron transfer from Pdx to P450cam, the alpha-helical region would not be included in the binding site with P450cam and some specific hydrogen bonds on the surface loop near the Fe-S center contribute to the electron transfer to P450cam. Such different binding sites and interactions for Pdx will shed light on the electron-transfer mechanism mediated by Pdx, the shuttle mechanism.
为了研究细胞色素P450cam系统中恶臭假单胞菌铁氧还蛋白(Pdx)与其氧化还原伙伴之间的相互作用,我们重点关注了带负电荷的表面氨基酸残基的作用。在这项突变研究中,我们检测的氨基酸残基是Asp-58、Glu-65、Glu-72和Glu-77,它们位于α-螺旋段上,在Pdx表面形成一个带负电荷的区域,并且被认为在与氧化还原伙伴NADH-恶臭假单胞菌铁氧还蛋白还原酶(PdR)和P450cam的结合中起关键作用。除了Glu-72处的突变外,这些氨基酸残基上单个负电荷的中和并没有显著抑制与氧化还原伙伴的电子转移反应。结合之前的结果,我们可以得出结论,α-螺旋段上带负电荷的簇对于Pdx/PdR复合物的电子转移并非至关重要,并且,对于Pdx与PdR的结合,空间位阻而非负电荷才是关键。在从Pdx到P450cam的电子转移过程中,α-螺旋区域不会包含在与P450cam的结合位点中,并且Fe-S中心附近表面环上的一些特定氢键有助于向P450cam的电子转移。Pdx的这种不同的结合位点和相互作用将有助于阐明由Pdx介导的电子转移机制,即穿梭机制。