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具有重复序列(脯氨酸-脯氨酸-甘氨酸)的类胶原蛋白肽的X射线晶体学测定

X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly).

作者信息

Kramer R Z, Vitagliano L, Bella J, Berisio R, Mazzarella L, Brodsky B, Zagari A, Berman H M

机构信息

Department of Chemistry, Rutgers University, 610 Taylor Rd, Piscataway, NJ 08854-8087, USA.

出版信息

J Mol Biol. 1998 Jul 24;280(4):623-38. doi: 10.1006/jmbi.1998.1881.

Abstract

The crystal structure of the triple-helical peptide (Pro-Pro-Gly)10 has been re-determined to obtain a more accurate description for this widely studied collagen model and to provide a comparison with the recent high-resolution crystal structure of a collagen-like peptide containing Pro-Hyp-Gly regions. This structure demonstrated that hydroxyproline participates extensively in a repetitive hydrogen-bonded assembly between the peptide and the solvent molecules. Two separate structural studies of the peptide (Pro-Pro-Gly)10 were performed with different crystallization conditions, data collection temperatures, and X-ray sources. The polymer-like structure of one triple-helical repeat of Pro-Pro-Gly has been determined to 2.0 A resolution in one case and 1.7 A resolution in the other. The solvent structures of the two peptides were independently determined specifically for validation purposes. The two structures display a reverse chain trace compared with the original structure determination. In comparison with the Hyp-containing peptide, the two Pro-Pro-Gly structures demonstrate very similar molecular conformation and analogous hydration patterns involving carbonyl groups, but have different crystal packing. This difference in crystal packing indicates that the involvement of hydroxyproline in an extended hydration network is critical for the lateral assembly and supermolecular structure of collagen.

摘要

已重新测定三螺旋肽(Pro-Pro-Gly)10的晶体结构,以便对这个被广泛研究的胶原蛋白模型进行更准确的描述,并与近期含有Pro-Hyp-Gly区域的类胶原蛋白肽的高分辨率晶体结构进行比较。该结构表明,羟脯氨酸广泛参与肽与溶剂分子之间的重复性氢键组装。在不同的结晶条件、数据收集温度和X射线源下,对肽(Pro-Pro-Gly)10进行了两项独立的结构研究。在一种情况下,Pro-Pro-Gly的一个三螺旋重复的类聚合物结构已确定至2.0 Å分辨率,在另一种情况下为1.7 Å分辨率。为了验证目的,专门独立确定了这两种肽的溶剂结构。与原始结构测定相比,这两种结构呈现出反向链迹。与含Hyp的肽相比,这两种Pro-Pro-Gly结构表现出非常相似的分子构象和涉及羰基的类似水合模式,但具有不同的晶体堆积。这种晶体堆积的差异表明,羟脯氨酸参与扩展水合网络对于胶原蛋白的侧向组装和超分子结构至关重要。

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