• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

两种形式的酿酒酵母DNA聚合酶δ的结构与持续合成能力

Structure and processivity of two forms of Saccharomyces cerevisiae DNA polymerase delta.

作者信息

Burgers P M, Gerik K J

机构信息

Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, Missouri 63110, USA.

出版信息

J Biol Chem. 1998 Jul 31;273(31):19756-62. doi: 10.1074/jbc.273.31.19756.

DOI:10.1074/jbc.273.31.19756
PMID:9677406
Abstract

Yeast DNA polymerase delta (Poldelta) consists of three subunits encoded by the POL3, POL31, and POL32 genes. Each of these genes was cloned under control of the galactose-inducible GAL1-10 promoter and overexpressed in various combinations. Overexpression of all three genes resulted in a 30-fold overproduction of Poldelta, which was identical in enzymatic properties to Poldelta isolated from a wild-type yeast strain. Whereas overproduction of POL3 together with POL32 did not lead to an identifiable Pol3p.Pol32p complex, a chromatographically distinct and novel complex was identified upon overproduction of POL3 and POL31. This two-subunit complex, designated Poldelta*, is structurally and functionally analogous to mammalian Poldelta. The properties of Poldelta* and Poldelta were compared. A gel filtration analysis showed that Poldelta* is a heterodimer (Pol3p.Pol31p) and Poldelta a dimer of a heterotrimer, (Pol3p.Pol31p.Pol32p)2. In the absence of proliferating cell nuclear antigen (PCNA), Poldelta* showed a processivity of 2-3 on poly(dA). oligo(dT) compared with 5-10 for Poldelta. In the presence of PCNA, both enzymes were fully processive on this template. DNA replication by Poldelta* on a natural DNA template was dependent on PCNA and on replication factor C. However, Poldelta*-mediated DNA synthesis proceeded inefficiently and was characterized by frequent pause sites. Reconstitution of Poldelta was achieved upon addition of Pol32p to Poldelta*.

摘要

酵母DNA聚合酶δ(Poldelta)由POL3、POL31和POL32基因编码的三个亚基组成。这些基因中的每一个都在半乳糖诱导型GAL1-10启动子的控制下进行克隆,并以各种组合方式过表达。所有三个基因的过表达导致Poldelta产量增加30倍,其酶学性质与从野生型酵母菌株中分离出的Poldelta相同。虽然POL3与POL32一起过表达不会产生可识别的Pol3p.Pol32p复合物,但在POL3和POL31过表达时鉴定出一种色谱上不同的新型复合物。这种二亚基复合物,称为Poldelta*,在结构和功能上类似于哺乳动物的Poldelta。对Poldelta和Poldelta的性质进行了比较。凝胶过滤分析表明,Poldelta是一种异二聚体(Pol3p.Pol31p),而Poldelta是一种异三聚体的二聚体,即(Pol3p.Pol31p.Pol32p)2。在没有增殖细胞核抗原(PCNA)的情况下,Poldelta在聚(dA)·寡聚(dT)上的持续合成能力为2-3,而Poldelta为5-10。在有PCNA的情况下,两种酶在该模板上都具有完全的持续合成能力。Poldelta在天然DNA模板上的DNA复制依赖于PCNA和复制因子C。然而,Poldelta介导的DNA合成效率低下,其特征是频繁出现停顿位点。通过向Poldelta中添加Pol32p实现了Poldelta的重组。

相似文献

1
Structure and processivity of two forms of Saccharomyces cerevisiae DNA polymerase delta.两种形式的酿酒酵母DNA聚合酶δ的结构与持续合成能力
J Biol Chem. 1998 Jul 31;273(31):19756-62. doi: 10.1074/jbc.273.31.19756.
2
Characterization of the two small subunits of Saccharomyces cerevisiae DNA polymerase delta.酿酒酵母DNA聚合酶δ两个小亚基的特性分析
J Biol Chem. 1998 Jul 31;273(31):19747-55. doi: 10.1074/jbc.273.31.19747.
3
PCNA binding domains in all three subunits of yeast DNA polymerase δ modulate its function in DNA replication.PCNA 结合域在酵母 DNA 聚合酶 δ 的三个亚基中都调节其在 DNA 复制中的功能。
Proc Natl Acad Sci U S A. 2011 Nov 1;108(44):17927-32. doi: 10.1073/pnas.1109981108. Epub 2011 Oct 14.
4
Mutations in yeast proliferating cell nuclear antigen define distinct sites for interaction with DNA polymerase delta and DNA polymerase epsilon.酵母增殖细胞核抗原中的突变确定了与DNA聚合酶δ和DNA聚合酶ε相互作用的不同位点。
Mol Cell Biol. 1997 Nov;17(11):6367-78. doi: 10.1128/MCB.17.11.6367.
5
DNA polymerase δ: A single Pol31 polymorphism suppresses the strain background-specific lethality of Pol32 inactivation in Saccharomyces cerevisiae.DNA 聚合酶 δ:单一的 Pol31 多态性可抑制酿酒酵母中 Pol32 失活的菌株背景特异性致死性。
DNA Repair (Amst). 2023 Jul;127:103514. doi: 10.1016/j.dnarep.2023.103514. Epub 2023 May 16.
6
Cryo-EM structure and dynamics of eukaryotic DNA polymerase δ holoenzyme.真核 DNA 聚合酶 δ 全酶的冷冻电镜结构与动态。
Nat Struct Mol Biol. 2019 Oct;26(10):955-962. doi: 10.1038/s41594-019-0305-z. Epub 2019 Oct 3.
7
Structure of eukaryotic DNA polymerase δ bound to the PCNA clamp while encircling DNA.真核 DNA 聚合酶 δ 与 PCNA 夹钳结合并环绕 DNA 时的结构。
Proc Natl Acad Sci U S A. 2020 Dec 1;117(48):30344-30353. doi: 10.1073/pnas.2017637117. Epub 2020 Nov 17.
8
The Pol32 subunit of DNA polymerase delta contains separable domains for processive replication and proliferating cell nuclear antigen (PCNA) binding.DNA聚合酶δ的Pol32亚基包含用于持续性复制和增殖细胞核抗原(PCNA)结合的可分离结构域。
J Biol Chem. 2004 Jan 16;279(3):1907-15. doi: 10.1074/jbc.M310362200. Epub 2003 Oct 31.
9
Structural insights into yeast DNA polymerase delta by small angle X-ray scattering.通过小角X射线散射对酵母DNA聚合酶δ的结构洞察
J Mol Biol. 2009 Dec 4;394(3):377-82. doi: 10.1016/j.jmb.2009.09.066. Epub 2009 Oct 8.
10
A Role for the Interactions between Polδ and PCNA Revealed by Analysis of Yeast Mutants.一种通过分析酵母突变体揭示的 Polδ 和 PCNA 相互作用的作用。
Genes (Basel). 2023 Feb 2;14(2):391. doi: 10.3390/genes14020391.

引用本文的文献

1
POLD3 as Controller of Replicative DNA Repair.POLD3 作为复制 DNA 修复的控制器。
Int J Mol Sci. 2024 Nov 19;25(22):12417. doi: 10.3390/ijms252212417.
2
TORC2 inhibition triggers yeast chromosome fragmentation through misregulated Base Excision Repair of clustered oxidation events.TORC2 抑制通过错调控的氧化簇事件碱基切除修复触发酵母染色体断裂。
Nat Commun. 2024 Nov 15;15(1):9908. doi: 10.1038/s41467-024-54142-z.
3
Timing of Chromosome DNA Integration throughout the Yeast Cell Cycle.酵母细胞周期中染色体 DNA 整合的时间。
Biomolecules. 2023 Mar 29;13(4):614. doi: 10.3390/biom13040614.
4
Saccharomyces cerevisiae DNA polymerase IV overcomes Rad51 inhibition of DNA polymerase δ in Rad52-mediated direct-repeat recombination.酿酒酵母 DNA 聚合酶 IV 克服 Rad51 对 DNA 聚合酶 δ 的抑制作用,促进 Rad52 介导的直接重复重组。
Nucleic Acids Res. 2023 Jun 23;51(11):5547-5564. doi: 10.1093/nar/gkad281.
5
Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 helix.嗜热毛壳菌 PolD4 N 端 PIP 模体与 PCNA 的非规范结合涉及 Q 口袋和紧凑的 2 叉塞相互作用,但不涉及 3 螺旋。
FEBS J. 2023 Jan;290(1):162-175. doi: 10.1111/febs.16590. Epub 2022 Aug 22.
6
Error-prone, stress-induced 3' flap-based Okazaki fragment maturation supports cell survival.易错、应激诱导的基于 3' 襻的冈崎片段成熟支持细胞存活。
Science. 2021 Dec 3;374(6572):1252-1258. doi: 10.1126/science.abj1013. Epub 2021 Dec 2.
7
Implementing fluorescence enhancement, quenching, and FRET for investigating flap endonuclease 1 enzymatic reaction at the single-molecule level.利用荧光增强、淬灭和荧光共振能量转移在单分子水平上研究瓣内切核酸酶1的酶促反应。
Comput Struct Biotechnol J. 2021 Jul 27;19:4456-4471. doi: 10.1016/j.csbj.2021.07.029. eCollection 2021.
8
The fidelity of DNA replication, particularly on GC-rich templates, is reduced by defects of the Fe-S cluster in DNA polymerase δ.DNA 聚合酶 δ 中 Fe-S 簇的缺陷会降低 DNA 复制的忠实性,特别是在富含 GC 的模板上。
Nucleic Acids Res. 2021 Jun 4;49(10):5623-5636. doi: 10.1093/nar/gkab371.
9
Enhanced cytarabine-induced killing in OGG1-deficient acute myeloid leukemia cells.OGG1 缺陷型急性髓系白血病细胞中阿糖胞苷诱导杀伤作用增强。
Proc Natl Acad Sci U S A. 2021 Mar 16;118(11). doi: 10.1073/pnas.2016833118.
10
Limiting DNA polymerase delta alters replication dynamics and leads to a dependence on checkpoint activation and recombination-mediated DNA repair.限制 DNA 聚合酶 δ 会改变复制动态,并导致对检查点激活和重组介导的 DNA 修复的依赖性。
PLoS Genet. 2021 Jan 25;17(1):e1009322. doi: 10.1371/journal.pgen.1009322. eCollection 2021 Jan.