• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于差异的化合物筛选算法比较。

Comparison of algorithms for dissimilarity-based compound selection.

作者信息

Snarey M, Terrett N K, Willett P, Wilton D J

机构信息

Pfizer Central Research, Sandwich, Kent, United Kingdom.

出版信息

J Mol Graph Model. 1997 Dec;15(6):372-85. doi: 10.1016/s1093-3263(98)00008-4.

DOI:10.1016/s1093-3263(98)00008-4
PMID:9704300
Abstract

Dissimilarity-based compound selection has been suggested as an effective method for selecting structurally diverse subsets of chemical databases. This article reports a comparison of several maximum-dissimilarity and sphere-exclusion algorithms for dissimilarity-based selection. The effectiveness of the algorithms is quantified by the numbers of biological activity classes identified in subsets selected from the World Drugs Index database, and by the numbers of active compounds identified in feedback searches of this database. The experiments demonstrate the general effectiveness and efficiency of the MaxMin algorithm.

摘要

基于差异的化合物选择已被认为是一种从化学数据库中选择结构多样子集的有效方法。本文报告了几种用于基于差异选择的最大差异和球排除算法的比较。通过从世界药物索引数据库中选择的子集中识别出的生物活性类别数量,以及通过对该数据库的反馈搜索中识别出的活性化合物数量,对算法的有效性进行了量化。实验证明了最大最小算法的总体有效性和效率。

相似文献

1
Comparison of algorithms for dissimilarity-based compound selection.基于差异的化合物筛选算法比较。
J Mol Graph Model. 1997 Dec;15(6):372-85. doi: 10.1016/s1093-3263(98)00008-4.
2
DISSIM: a program for the analysis of chemical diversity.
J Mol Graph Model. 1998 Aug-Dec;16(4-6):239-53, 264. doi: 10.1016/s1093-3263(98)80008-9.
3
Dissimilarity-based algorithms for selecting structurally diverse sets of compounds.用于选择结构多样化合物集的基于差异的算法。
J Comput Biol. 1999 Fall-Winter;6(3-4):447-57. doi: 10.1089/106652799318382.
4
Method for effective virtual screening and scaffold-hopping in chemical compounds.化合物有效虚拟筛选和骨架跳跃的方法。
Comput Syst Bioinformatics Conf. 2007;6:403-14.
5
Experimental studies of the Universal Chemical Key (UCK) algorithm on the NCI database of chemical compounds.通用化学密钥(UCK)算法在NCI化合物数据库上的实验研究。
Proc IEEE Comput Soc Bioinform Conf. 2003;2:244-50.
6
Classification of biologically active compounds by median partitioning.通过中位数划分对生物活性化合物进行分类。
J Chem Inf Comput Sci. 2002 Sep-Oct;42(5):1263-9. doi: 10.1021/ci020372m.
7
Multi-view spectral clustering and its chemical application.多视图光谱聚类及其化学应用。
Int J Comput Biol Drug Des. 2013;6(1-2):32-49. doi: 10.1504/IJCBDD.2013.052200. Epub 2013 Feb 21.
8
In silico screening of drug databases for TSE inhibitors.针对传染性海绵状脑病抑制剂对药物数据库进行计算机模拟筛选。
Biosystems. 2005 May;80(2):117-22. doi: 10.1016/j.biosystems.2004.10.004.
9
Identification of biological activity profiles using substructural analysis and genetic algorithms.
J Chem Inf Comput Sci. 1998 Mar-Apr;38(2):165-79. doi: 10.1021/ci970431+.
10
Random or rational design? Evaluation of diverse compound subsets from chemical structure databases.随机设计还是合理设计?对化学结构数据库中不同化合物子集的评估。
J Med Chem. 1998 Feb 12;41(4):478-88. doi: 10.1021/jm9700878.

引用本文的文献

1
Development of chemical categories for per- and polyfluoroalkyl substances (PFAS) and the proof-of-concept approach to the identification of potential candidates for tiered toxicological testing and human health assessment.全氟和多氟烷基物质(PFAS)化学类别的开发以及用于确定分层毒理学测试和人类健康评估潜在候选物的概念验证方法。
Comput Toxicol. 2024 Sep 1;31:100327. doi: 10.1016/j.comtox.2024.100327.
2
Identification of estrogen receptor agonists among hydroxylated polychlorinated biphenyls using classification-based quantitative structure-activity relationship models.利用基于分类的定量构效关系模型鉴定羟基化多氯联苯中的雌激素受体激动剂。
Curr Res Toxicol. 2024 Feb 23;6:100158. doi: 10.1016/j.crtox.2024.100158. eCollection 2024.
3
Deconstructing Markush: Improving the R&D Efficiency Using Library Selection in Early Drug Discovery.解构马库什结构:在早期药物发现中通过库筛选提高研发效率。
Pharmaceuticals (Basel). 2022 Sep 18;15(9):1159. doi: 10.3390/ph15091159.
4
characterization and rational analog design of a novel inhibitor of telomerase assembly in MDA MB 231 breast cancer cell line.在 MDA-MB-231 乳腺癌细胞系中鉴定和合理模拟新型端粒酶组装抑制剂。
Oncol Rep. 2022 Nov;48(5). doi: 10.3892/or.2022.8403. Epub 2022 Sep 14.
5
Selecting molecules with diverse structures and properties by maximizing submodular functions of descriptors learned with graph neural networks.通过最大化基于图神经网络学习的描述符的子模函数来选择具有多样结构和性质的分子。
Sci Rep. 2022 Jan 21;12(1):1124. doi: 10.1038/s41598-022-04967-9.
6
Extended similarity indices: the benefits of comparing more than two objects simultaneously. Part 2: speed, consistency, diversity selection.扩展相似性指数:同时比较两个以上对象的益处。第2部分:速度、一致性、多样性选择。
J Cheminform. 2021 Apr 23;13(1):33. doi: 10.1186/s13321-021-00504-4.
7
A Comprehensive QSAR Study on Antileishmanial and Antitrypanosomal Cinnamate Ester Analogues.抗利什曼原虫和抗锥虫肉桂酸酯类似物的全面定量构效关系研究。
Molecules. 2019 Nov 28;24(23):4358. doi: 10.3390/molecules24234358.
8
Deep learning for prediction of pharmaceutical formulations.用于预测药物制剂的深度学习
Acta Pharm Sin B. 2019 Jan;9(1):177-185. doi: 10.1016/j.apsb.2018.09.010. Epub 2018 Sep 28.
9
Comparative virtual screening and novelty detection for NMDA-GlycineB antagonists.比较虚拟筛选和 NMDA-甘氨酸 B 拮抗剂的新颖性检测。
J Comput Aided Mol Des. 2009 Dec;23(12):869-81. doi: 10.1007/s10822-009-9304-1. Epub 2009 Nov 5.
10
Analysis and use of fragment-occurrence data in similarity-based virtual screening.基于相似性的虚拟筛选中片段出现数据的分析与应用。
J Comput Aided Mol Des. 2009 Sep;23(9):655-68. doi: 10.1007/s10822-009-9285-0. Epub 2009 Jun 18.