• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

来自大肠杆菌的腺苷高半胱氨酸/甲硫腺苷核苷酶的催化机制——具有显著氧鎓离子特征的过渡态的化学证据。

The catalytic mechanism of adenosylhomocysteine/methylthioadenosine nucleosidase from Escherichia coli--chemical evidence for a transition state with a substantial oxocarbenium character.

作者信息

Allart B, Gatel M, Guillerm D, Guillerm G

机构信息

Laboratoire de Chimie Bioorganique, Associé au C.N.R.S., U.F.R. Sciences de Reims, France.

出版信息

Eur J Biochem. 1998 Aug 15;256(1):155-62. doi: 10.1046/j.1432-1327.1998.2560155.x.

DOI:10.1046/j.1432-1327.1998.2560155.x
PMID:9746359
Abstract

The substrate and inhibitory specificity of Escherichia coli adenosylhomocysteine (AdoHcy)/methylthioadenosine (MeSAdo) nucleosidase has been explored with several MeSAdo analogues modified on the sugar moiety at the 2', 3' and 5' positions. Alteration at C3' or at C2' and C3' positions in MeSAdo abolished substrate activity. However, the 2'-deoxy analogue of MeSAdo is effective as a substrate; this result provides evidence against a possible general-base catalysis involving the anchimeric assistance of the 2'-alpha-hydroxy group and the formation of a 1,2-epoxide as an intermediate in the catalytic process. The results of a study of the interaction of an 8,5'-cyclo analogue of MeSAdo with the enzyme indicate the importance of the glycosidic conformation of the substrate for binding to the active site. The enzyme discriminates against methanol attack from the solvent during catalysis. This implies the participation of an enzyme-directed water nucleophile. A poor solvent kinetic deuterium-isotope effect was measured (0.93) on the Vmax. Plots of log Vmax and log (Vmax/Km) for MeSAdo as a function of pH values from 5.0 to 8.5 are similar, with two presumably essential ionisable groups for catalysis with apparent pKa values of 5.6 and 8.2, whereas Km is independent of pH. When the 2'-alpha-hydroxy group of MeSAdo is substituted by fluorine, a significant decrease (28 500-fold) in the Vmax for enzyme-catalysed hydrolysis of the modified substrate is observed. This result indicates a transition state with a substantial oxocarbenium character. From these data, the reaction mechanism for AdoHcy/MeSAdo nucleosidase is discussed.

摘要

利用在2'、3'和5'位糖部分修饰的几种甲硫腺苷(MeSAdo)类似物,对大肠杆菌腺苷高半胱氨酸(AdoHcy)/甲硫腺苷(MeSAdo)核苷酶的底物和抑制特异性进行了研究。MeSAdo中C3'位或C2'和C3'位的改变消除了底物活性。然而,MeSAdo的2'-脱氧类似物作为底物是有效的;这一结果为反对可能涉及2'-α-羟基的邻基参与协助以及在催化过程中形成1,2-环氧化物中间体的一般碱催化提供了证据。一项关于MeSAdo的8,5'-环类似物与该酶相互作用的研究结果表明,底物的糖苷构象对于与活性位点结合很重要。该酶在催化过程中可区分来自溶剂的甲醇攻击。这意味着存在一种由酶引导的水亲核试剂参与。在Vmax上测得较差的溶剂动力学氘同位素效应(0.93)。以pH值从5.0到8.5为函数绘制的MeSAdo的log Vmax和log(Vmax/Km)曲线相似,催化过程中可能有两个必需的可电离基团,表观pKa值分别为5.6和8.2,而Km与pH无关。当MeSAdo的2'-α-羟基被氟取代时,观察到修饰底物的酶催化水解的Vmax显著降低(28500倍)。这一结果表明存在具有大量氧鎓离子特征的过渡态。根据这些数据,对AdoHcy/MeSAdo核苷酶的反应机制进行了讨论。

相似文献

1
The catalytic mechanism of adenosylhomocysteine/methylthioadenosine nucleosidase from Escherichia coli--chemical evidence for a transition state with a substantial oxocarbenium character.来自大肠杆菌的腺苷高半胱氨酸/甲硫腺苷核苷酶的催化机制——具有显著氧鎓离子特征的过渡态的化学证据。
Eur J Biochem. 1998 Aug 15;256(1):155-62. doi: 10.1046/j.1432-1327.1998.2560155.x.
2
Escherichia coli S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase. Purification, substrate specificity and mechanism of action.大肠杆菌S-腺苷高半胱氨酸/5'-甲硫基腺苷核苷酶。纯化、底物特异性及作用机制。
Biochem J. 1985 Dec 1;232(2):335-41. doi: 10.1042/bj2320335.
3
Structure of Escherichia coli 5'-methylthioadenosine/ S-adenosylhomocysteine nucleosidase inhibitor complexes provide insight into the conformational changes required for substrate binding and catalysis.大肠杆菌5'-甲硫基腺苷/S-腺苷同型半胱氨酸核苷酶抑制剂复合物的结构有助于深入了解底物结合和催化所需的构象变化。
J Biol Chem. 2003 Mar 7;278(10):8761-70. doi: 10.1074/jbc.M210836200. Epub 2002 Dec 20.
4
Structure of E. coli 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase reveals similarity to the purine nucleoside phosphorylases.大肠杆菌5'-甲硫基腺苷/ S-腺苷高半胱氨酸核苷酶的结构显示出与嘌呤核苷磷酸化酶的相似性。
Structure. 2001 Oct;9(10):941-53. doi: 10.1016/s0969-2126(01)00656-6.
5
Substrate specificities of 5'-deoxy-5'-methylthioadenosine phosphorylase from Trypanosoma brucei brucei and mammalian cells.布氏布氏锥虫和哺乳动物细胞中5'-脱氧-5'-甲硫基腺苷磷酸化酶的底物特异性
Mol Biochem Parasitol. 1988 Jan 15;27(2-3):109-18. doi: 10.1016/0166-6851(88)90030-8.
6
Transition state structure of 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Escherichia coli and its similarity to transition state analogues.来自大肠杆菌的5'-甲硫基腺苷/ S-腺苷高半胱氨酸核苷酶的过渡态结构及其与过渡态类似物的相似性。
Biochemistry. 2005 Sep 6;44(35):11647-59. doi: 10.1021/bi050863a.
7
On the catalytic mechanism of adenosylhomocysteine/methylthioadenosine nucleosidase from E. coli.关于大肠杆菌腺苷同型半胱氨酸/甲硫基腺苷核苷酶的催化机制
Nucleosides Nucleotides. 1999 Apr-May;18(4-5):861-2. doi: 10.1080/15257779908041582.
8
Structural snapshots of MTA/AdoHcy nucleosidase along the reaction coordinate provide insights into enzyme and nucleoside flexibility during catalysis.沿着反应坐标的MTA/腺苷高半胱氨酸核苷酶的结构快照为催化过程中酶和核苷的灵活性提供了见解。
J Mol Biol. 2005 Sep 23;352(3):559-74. doi: 10.1016/j.jmb.2005.07.027.
9
Nucleoside hydrolase from Crithidia fasciculata. Metabolic role, purification, specificity, and kinetic mechanism.来自克氏锥虫的核苷水解酶。代谢作用、纯化、特异性及动力学机制。
J Biol Chem. 1991 Nov 5;266(31):20658-65.
10
Mutational analysis of a nucleosidase involved in quorum-sensing autoinducer-2 biosynthesis.参与群体感应自诱导物-2生物合成的核苷酶的突变分析。
Biochemistry. 2005 Aug 23;44(33):11049-57. doi: 10.1021/bi050493q.

引用本文的文献

1
Transition-State Analogues of Campylobacter jejuni 5'-Methylthioadenosine Nucleosidase.空肠弯曲菌 5′-甲基硫代腺苷核苷酶的过渡态类似物。
ACS Chem Biol. 2018 Nov 16;13(11):3173-3183. doi: 10.1021/acschembio.8b00781. Epub 2018 Oct 19.
2
Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states.幽门螺杆菌5'-甲硫基腺苷核苷酶的中子结构突出了质子共享和质子化状态。
Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13756-13761. doi: 10.1073/pnas.1609718113. Epub 2016 Nov 16.
3
A Comparative Analysis of Acyl-Homoserine Lactone Synthase Assays.
酰基高丝氨酸内酯合成酶测定法的比较分析
Chembiochem. 2015 Dec;16(18):2651-9. doi: 10.1002/cbic.201500387. Epub 2015 Nov 6.
4
Structural and biochemical characterization of Chlamydia trachomatis hypothetical protein CT263 supports that menaquinone synthesis occurs through the futalosine pathway.沙眼衣原体假定蛋白CT263的结构和生化特性表明,甲基萘醌的合成是通过呋喃洛辛途径进行的。
J Biol Chem. 2014 Nov 14;289(46):32214-32229. doi: 10.1074/jbc.M114.594325. Epub 2014 Sep 24.
5
Salmonella enterica MTAN at 1.36 Å resolution: a structure-based design of tailored transition state analogs.沙门氏菌 MTAN 的 1.36Å 分辨率结构:基于结构的定制过渡态类似物设计。
Structure. 2013 Jun 4;21(6):963-74. doi: 10.1016/j.str.2013.04.009. Epub 2013 May 16.
6
Crystal structures of the Helicobacter pylori MTAN enzyme reveal specific interactions between S-adenosylhomocysteine and the 5'-alkylthio binding subsite.幽门螺旋杆菌 MTAN 酶的晶体结构揭示了 S-腺苷同型半胱氨酸与 5'-烷硫基结合亚基之间的特定相互作用。
Biochemistry. 2012 Dec 4;51(48):9763-72. doi: 10.1021/bi301221k. Epub 2012 Nov 20.
7
Methylthioadenosine/S-adenosylhomocysteine nucleosidase, a critical enzyme for bacterial metabolism.甲基硫腺苷/ S-腺苷同型半胱氨酸核苷酶,细菌代谢的关键酶。
Mol Microbiol. 2011 Jan;79(1):7-20. doi: 10.1111/j.1365-2958.2010.07455.x. Epub 2010 Nov 18.
8
Enzyme-ligand interactions that drive active site rearrangements in the Helicobacter pylori 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase.驱动幽门螺杆菌 5'-甲基硫代腺苷/S-腺苷同型半胱氨酸核苷酶活性位点重排的酶-配体相互作用。
Protein Sci. 2010 Dec;19(12):2498-510. doi: 10.1002/pro.524.
9
Ribosyl geometry in the transition state of Streptococcus pneumoniae methylthioadenosine nucleosidase from the 3'-(2)H kinetic isotope effect.基于3'-(2)H动力学同位素效应的肺炎链球菌甲硫腺苷核苷酶过渡态中的核糖基几何结构
J Am Chem Soc. 2008 Sep 3;130(35):11617-9. doi: 10.1021/ja804578m. Epub 2008 Aug 12.
10
Synthesis and analysis of substrate analogues for UDP-galactopyranose mutase: implication for an oxocarbenium ion intermediate in the catalytic mechanism.UDP-吡喃半乳糖变位酶底物类似物的合成与分析:对催化机制中氧鎓离子中间体的启示
Org Lett. 2007 Mar 1;9(5):879-82. doi: 10.1021/ol0631408. Epub 2007 Feb 1.