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来自大肠杆菌的腺苷高半胱氨酸/甲硫腺苷核苷酶的催化机制——具有显著氧鎓离子特征的过渡态的化学证据。

The catalytic mechanism of adenosylhomocysteine/methylthioadenosine nucleosidase from Escherichia coli--chemical evidence for a transition state with a substantial oxocarbenium character.

作者信息

Allart B, Gatel M, Guillerm D, Guillerm G

机构信息

Laboratoire de Chimie Bioorganique, Associé au C.N.R.S., U.F.R. Sciences de Reims, France.

出版信息

Eur J Biochem. 1998 Aug 15;256(1):155-62. doi: 10.1046/j.1432-1327.1998.2560155.x.

Abstract

The substrate and inhibitory specificity of Escherichia coli adenosylhomocysteine (AdoHcy)/methylthioadenosine (MeSAdo) nucleosidase has been explored with several MeSAdo analogues modified on the sugar moiety at the 2', 3' and 5' positions. Alteration at C3' or at C2' and C3' positions in MeSAdo abolished substrate activity. However, the 2'-deoxy analogue of MeSAdo is effective as a substrate; this result provides evidence against a possible general-base catalysis involving the anchimeric assistance of the 2'-alpha-hydroxy group and the formation of a 1,2-epoxide as an intermediate in the catalytic process. The results of a study of the interaction of an 8,5'-cyclo analogue of MeSAdo with the enzyme indicate the importance of the glycosidic conformation of the substrate for binding to the active site. The enzyme discriminates against methanol attack from the solvent during catalysis. This implies the participation of an enzyme-directed water nucleophile. A poor solvent kinetic deuterium-isotope effect was measured (0.93) on the Vmax. Plots of log Vmax and log (Vmax/Km) for MeSAdo as a function of pH values from 5.0 to 8.5 are similar, with two presumably essential ionisable groups for catalysis with apparent pKa values of 5.6 and 8.2, whereas Km is independent of pH. When the 2'-alpha-hydroxy group of MeSAdo is substituted by fluorine, a significant decrease (28 500-fold) in the Vmax for enzyme-catalysed hydrolysis of the modified substrate is observed. This result indicates a transition state with a substantial oxocarbenium character. From these data, the reaction mechanism for AdoHcy/MeSAdo nucleosidase is discussed.

摘要

利用在2'、3'和5'位糖部分修饰的几种甲硫腺苷(MeSAdo)类似物,对大肠杆菌腺苷高半胱氨酸(AdoHcy)/甲硫腺苷(MeSAdo)核苷酶的底物和抑制特异性进行了研究。MeSAdo中C3'位或C2'和C3'位的改变消除了底物活性。然而,MeSAdo的2'-脱氧类似物作为底物是有效的;这一结果为反对可能涉及2'-α-羟基的邻基参与协助以及在催化过程中形成1,2-环氧化物中间体的一般碱催化提供了证据。一项关于MeSAdo的8,5'-环类似物与该酶相互作用的研究结果表明,底物的糖苷构象对于与活性位点结合很重要。该酶在催化过程中可区分来自溶剂的甲醇攻击。这意味着存在一种由酶引导的水亲核试剂参与。在Vmax上测得较差的溶剂动力学氘同位素效应(0.93)。以pH值从5.0到8.5为函数绘制的MeSAdo的log Vmax和log(Vmax/Km)曲线相似,催化过程中可能有两个必需的可电离基团,表观pKa值分别为5.6和8.2,而Km与pH无关。当MeSAdo的2'-α-羟基被氟取代时,观察到修饰底物的酶催化水解的Vmax显著降低(28500倍)。这一结果表明存在具有大量氧鎓离子特征的过渡态。根据这些数据,对AdoHcy/MeSAdo核苷酶的反应机制进行了讨论。

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