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氯过氧化物酶活性位点的立体化学:晶体学与分子建模研究

Stereochemistry of the chloroperoxidase active site: crystallographic and molecular-modeling studies.

作者信息

Sundaramoorthy M, Terner J, Poulos T L

机构信息

Department of Molecular Biology, University of California, Irvine 92697-3900, USA.

出版信息

Chem Biol. 1998 Sep;5(9):461-73. doi: 10.1016/s1074-5521(98)90003-5.

Abstract

BACKGROUND

Chloroperoxidase (CPO) is the most versatile of the known heme enzymes. It catalyzes chlorination of activated C-H bonds, as well as peroxidase, catalase and cytochrome P450 reactions, including enantioselective epoxidation. CPO contains a proximal heme-thiolate ligand, like P450, and polar distal pocket, like peroxidase. The substrate-binding site is formed by an opening above the heme that enables organic substrates to approach the activated oxoferryl oxygen atom. CPO, unlike other peroxidases, utilizes a glutamate acid-base catalyst, rather than a histidine residue.

RESULTS

The crystal structures of CPO complexed with exogenous ligands, carbon monoxide, nitric oxide, cyanide and thiocyanate, have been determined. The distal pocket discriminates ligands on the basis of size and pKa. The refined CPO-ligand structures indicate a rigid active-site architecture with an immobile glutamate acid-base catalyst. Molecular modeling and dynamics simulations of CPO with the substrate cis-beta methylstyrene and the corresponding epoxide products provide a structural and energetic basis for understanding the enantioselectivity of CPO-catalyzed epoxidation reactions.

CONCLUSIONS

The various CPO-ligand structures provide the basis for a detailed stereochemical mechanism of the formation of the intermediate compound I, in which Glu183 acts as an acid-base catalyst. The observed rigidity in the active site also explains the relative instability of CPO compound I and the formation of the HOCI chlorinating species. Energetics of CPO-substrate/ product molecular modeling provides a theoretical basis for the P450-type enantioselective epoxidation activities of CPO.

摘要

背景

氯过氧化物酶(CPO)是已知的血红素酶中功能最为多样的一种。它催化活化的C-H键的氯化反应,以及过氧化物酶、过氧化氢酶和细胞色素P450反应,包括对映选择性环氧化反应。CPO含有一个近端血红素-硫醇盐配体,类似于细胞色素P450,还有一个极性的远端口袋,类似于过氧化物酶。底物结合位点由血红素上方的一个开口形成,该开口使有机底物能够接近活化的氧合铁氧原子。与其他过氧化物酶不同,CPO利用谷氨酸酸碱催化剂,而不是组氨酸残基。

结果

已确定CPO与外源性配体一氧化碳、一氧化氮、氰化物和硫氰酸盐形成的复合物的晶体结构。远端口袋根据大小和pKa区分配体。优化后的CPO-配体结构表明活性位点结构刚性,谷氨酸酸碱催化剂固定不动。用底物顺式-β-甲基苯乙烯和相应环氧化物产物对CPO进行分子建模和动力学模拟,为理解CPO催化环氧化反应的对映选择性提供了结构和能量基础。

结论

各种CPO-配体结构为中间体化合物I形成的详细立体化学机制提供了基础,其中Glu183作为酸碱催化剂。活性位点观察到的刚性也解释了CPO化合物I的相对不稳定性以及次氯酸氯化物种的形成。CPO-底物/产物分子建模的能量学为CPO的细胞色素P450型对映选择性环氧化活性提供了理论基础。

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