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来自一种适应低温鱼类的非嗜冷胰蛋白酶的结构

Structure of a non-psychrophilic trypsin from a cold-adapted fish species.

作者信息

Schrøder H K, Willassen N P, Smalås A O

机构信息

Protein Crystallography Group, Institute of Chemistry, Faculty of Science, University of Tromso, N-9037, Tromso, Norway.

出版信息

Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):780-98. doi: 10.1107/s0907444997018611.

Abstract

The crystal structure of cationic trypsin (CST) from the Atlantic salmon (Salmo salar) has been refined at 1.70 A resolution. The crystals are orthorhombic, belong to space group P212121, with lattice parameters a = 65.91, b = 83.11 and c = 154.79 A, and comprise four molecules per asymmetric unit. The structure was solved by molecular replacement with AMoRe and refined with X-PLOR to an R value of 17.4% and Rfree of 21.5% for reflections |F| > 3sigmaF between 8.0 and 1.7 A resolution. The four non-crystallographic symmetry (NCS) related molecules in the asymmetric unit display r.m.s. deviations in the range 0.31-0.74 A for main-chain atoms, with the largest differences confined to two loops. One of these is the calcium-binding loop where the electron-density indicates a calcium ion for only one of the four molecules. In order to find structural rationalizations for the observed difference in thermostability and catalytic efficiency of CST, anionic salmon trypsin (AST) and bovine trypsin (BT), the three structures have been extensively compared. The largest deviations for the superimposed structures occur in the surface loops and particularly in the so-called 'autolysis loop'. Both the salmon enzymes possess a high methionine content, lower overall hydrophobicity and enhanced surface hydrophilicity, compared with BT. These properties have so far been correlated to cold-adaptation features, while in this work it is shown that the non-psychrophilic cationic salmon trypsin shares these features with the psychrophilic anionic salmon trypsin.

摘要

大西洋鲑鱼(Salmo salar)阳离子胰蛋白酶(CST)的晶体结构已在1.70 Å分辨率下进行了精修。晶体为正交晶系,属于空间群P212121,晶格参数a = 65.91、b = 83.11和c = 154.79 Å,每个不对称单元包含四个分子。该结构通过使用AMoRe进行分子置换求解,并使用X-PLOR进行精修,对于8.0至1.7 Å分辨率下|F| > 3σF的反射,R值为17.4%,Rfree为21.5%。不对称单元中四个与非晶体学对称性(NCS)相关的分子,其主链原子的均方根偏差在0.31 - 0.74 Å范围内,最大差异局限于两个环。其中一个是钙结合环,电子密度表明四个分子中只有一个分子存在钙离子。为了找到观察到的CST、阴离子鲑鱼胰蛋白酶(AST)和牛胰蛋白酶(BT)在热稳定性和催化效率方面差异的结构合理化解释,对这三种结构进行了广泛比较。叠加结构的最大偏差出现在表面环,特别是所谓的“自溶环”。与BT相比,两种鲑鱼酶都具有高蛋氨酸含量、较低的整体疏水性和增强的表面亲水性。到目前为止,这些特性与冷适应特征相关,而在这项工作中表明,非嗜冷性阳离子鲑鱼胰蛋白酶与嗜冷性阴离子鲑鱼胰蛋白酶具有这些共同特征。

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