Balbach J, Seip S, Kessler H, Scharf M, Kashani-Poor N, Engels J W
Institut für Organische Chemie und Biochemie, Technische Universität München, Garching, Germany.
Proteins. 1998 Nov 1;33(2):285-94. doi: 10.1002/(sici)1097-0134(19981101)33:2<285::aid-prot11>3.0.co;2-g.
Covalent linkages such as disulfide bonds are important for the stabilization of proteins. In the present NMR study we compare the structure and the dynamics of the single disulfide-deficient variant C45A/C73A of the alpha-amylase inhibitor tendamistat and the wild-type protein, which contains two disulfide bonds (C11-C27 and C45-C73). Complete proton assignment was achieved by standard homonuclear 2D techniques for the variant. Chemical shift differences, intra-strand NOE effects and protected amide proton were used to compare the connectivity of the secondary structure elements of variant and wild-type. Dynamic properties of the wild-type protein were studied by 13C(alpha) heteronuclear NOE experiments with carbon in natural abundance. 15N isotope labeling was necessary to obtain the relaxation parameters of the variant, because of sample degradation. The 15N resonance assignment was achieved by a 15N 3D-NOESY-HMQC. Removal of the C45-C73 bond by the C45A/C73A mutation has no influence upon the beta-barrel structure of tendamistat beside very local changes at the mutation site. The relaxation data revealed only subtle differences between variant and wild-type on a subnanosecond time scale. Only the N-terminus and G62 in the connecting loop between the anti-parallel beta-sheets showed an increased mobility. The results are discussed in respect to thermodynamic stability and the secretion efficiency of tendamistat.
诸如二硫键之类的共价键对于蛋白质的稳定性很重要。在当前的核磁共振研究中,我们比较了α-淀粉酶抑制剂田抗淀粉酶素的单二硫键缺陷变体C45A/C73A与野生型蛋白质的结构和动力学,野生型蛋白质含有两个二硫键(C11-C27和C45-C73)。通过标准的同核二维技术实现了该变体的完全质子归属。利用化学位移差异、链内核Overhauser效应(NOE效应)和受保护的酰胺质子来比较变体和野生型二级结构元件的连接性。通过天然丰度碳的13C(α)异核NOE实验研究了野生型蛋白质的动力学性质。由于样品降解,需要进行15N同位素标记以获得变体的弛豫参数。通过15N 3D-NOESY-HMQC实现了15N共振归属。C45A/C73A突变去除C45-C73键后,除了突变位点处非常局部的变化外,对田抗淀粉酶素的β-桶结构没有影响。弛豫数据仅揭示了变体和野生型在亚纳秒时间尺度上的细微差异。只有反平行β-折叠之间连接环中的N端和G62显示出增加的流动性。从田抗淀粉酶素的热力学稳定性和分泌效率方面对结果进行了讨论。