Turoverov K K, Kuznetsova I M
Institute of Cytology, Russian Academy of Sciences, St. Petersburg.
Tsitologiia. 1998;40(8-9):735-46.
A review of literature and our own data on intramolecular mobility of aromatic amino acids in proteins are presented. The necessity to take into account a possible existence of the nanosecond intramolecular mobility with the rotational relaxation time independent of solvent viscosity is pointed out. A comparison of spectral and polarizational characteristics of a number of proteins allowed to solve the problem of the mobility of tryptophan residues localized in the inner regions of macromolecules. According to experimental data, such tryptophan residues can be even more mobile than those located closer to the surface but in the surrounding of polar groups. It is most evident when comparing the intramolecular mobility of tryptophan residues of native proteins and some proteins in the intermediate state of the "molten globule" type. The comparison of experimental data with molecular dynamic simulations contributes substantially to the concepts of tryptophan residue mobility in proteins.
本文综述了有关蛋白质中芳香族氨基酸分子内流动性的文献以及我们自己的数据。指出有必要考虑存在纳秒级分子内流动性,其旋转弛豫时间与溶剂粘度无关。对多种蛋白质的光谱和极化特性进行比较,有助于解决位于大分子内部区域的色氨酸残基的流动性问题。根据实验数据,这类色氨酸残基甚至可能比那些位于靠近表面但处于极性基团周围的色氨酸残基更具流动性。当比较天然蛋白质和一些处于“熔球”型中间状态的蛋白质中色氨酸残基的分子内流动性时,这一点最为明显。将实验数据与分子动力学模拟进行比较,对蛋白质中色氨酸残基流动性的概念有很大贡献。