Suppr超能文献

ASDB：可变剪接基因数据库。

ASDB: database of alternatively spliced genes.

作者信息

Gelfand M S, Dubchak I, Dralyuk I, Zorn M

机构信息

Institute of Protein Research, Russian Academy of Sciences, Pushchino 142292, Russia.

出版信息

Nucleic Acids Res. 1999 Jan 1;27(1):301-2. doi: 10.1093/nar/27.1.301.

DOI:10.1093/nar/27.1.301
PMID:9847209
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC148164/
Abstract

A database of alternatively spliced genes (ASDB) has been constructed based on (i) the results of the analysis of Swiss-Prot entries containing products of these genes and (ii) clustering procedure joining proteins that could arise by alternative splicing of the same gene. ASDB incorporates information about alternatively spliced genes, their products and expression patterns. It can be searched in order to find all products of alternative splicing produced in a particular tissue or a given organism, or all variants generated by a particular transcript. ASDB currently contains about 1700 protein sequences and can be accessed via the Internet at URL http://cbcg.nersc.gov/asdb

摘要

一个可变剪接基因数据库（ASDB）已经基于以下内容构建：（i）对包含这些基因产物的Swiss-Prot条目分析结果，以及（ii）将可能由同一基因的可变剪接产生的蛋白质连接起来的聚类程序。ASDB整合了关于可变剪接基因、其产物和表达模式的信息。可以通过搜索该数据库来找到在特定组织或给定生物体中产生的所有可变剪接产物，或由特定转录本产生的所有变体。ASDB目前包含约1700个蛋白质序列，可通过互联网在网址http://cbcg.nersc.gov/asdb访问。

相似文献

1
ASDB: database of alternatively spliced genes.ASDB：可变剪接基因数据库。
Nucleic Acids Res. 1999 Jan 1;27(1):301-2. doi: 10.1093/nar/27.1.301.
2
ASDB: database of alternatively spliced genes.ASDB：可变剪接基因数据库。
Nucleic Acids Res. 2000 Jan 1;28(1):296-7. doi: 10.1093/nar/28.1.296.
3
AsMamDB: an alternative splice database of mammals.AsMamDB：一个哺乳动物可变剪接数据库。
Nucleic Acids Res. 2001 Jan 1;29(1):260-3. doi: 10.1093/nar/29.1.260.
4
VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.VARSPLIC：源自SWISS-PROT和TrEMBL的可变剪接蛋白质序列。
Bioinformatics. 2000 Nov;16(11):1048-9. doi: 10.1093/bioinformatics/16.11.1048.
5
ASD: the Alternative Splicing Database.ASD：可变剪接数据库。
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D64-9. doi: 10.1093/nar/gkh030.
6
Protein-based analysis of alternative splicing in the human genome.基于蛋白质的人类基因组可变剪接分析。
Proc IEEE Comput Soc Bioinform Conf. 2002;1:118-24.
7
ASDB: a resource for probing protein functions with small molecules.ASDB：一种利用小分子探测蛋白质功能的资源。
Bioinformatics. 2016 Jun 1;32(11):1752-4. doi: 10.1093/bioinformatics/btw055. Epub 2016 Jan 28.
8
[Is alternative splicing of mammalian genes conservative?].[哺乳动物基因的可变剪接具有保守性吗？]
Biofizika. 2002 Jul-Aug;47(4):587-94.
9
Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.选择性剪接的同源外显子具有古老的起源，并且在蛋白质水平上高度表达。
PLoS Comput Biol. 2015 Jun 10;11(6):e1004325. doi: 10.1371/journal.pcbi.1004325. eCollection 2015 Jun.
10
Alternatively spliced human genes by exon skipping--a database (ASHESdb).通过外显子跳跃产生的可变剪接人类基因——一个数据库（ASHESdb）
In Silico Biol. 2005;5(3):221-5. Epub 2004 Dec 8.

引用本文的文献

1
SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis.SpliceMiner：用于微阵列剪接变体分析的NCBI证据查看器的高通量数据库实现。
BMC Bioinformatics. 2007 Mar 5;8:75. doi: 10.1186/1471-2105-8-75.
2
Integrating alternative splicing detection into gene prediction.将可变剪接检测整合到基因预测中。
BMC Bioinformatics. 2005 Feb 10;6:25. doi: 10.1186/1471-2105-6-25.
3
Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.可变起始、剪接和终止对小鼠转录组编码的mRNA转录本多样性的影响。
Genome Res. 2003 Jun;13(6B):1290-300. doi: 10.1101/gr.1017303.
4
RNA-protein interactions that regulate pre-mRNA splicing.调控前体信使核糖核酸剪接的核糖核酸-蛋白质相互作用。
Gene Expr. 2002;10(1-2):79-92.
5
Predicting splice variant from DNA chip expression data.从DNA芯片表达数据预测剪接变体。
Genome Res. 2001 Jul;11(7):1237-45. doi: 10.1101/gr.165501.
6
PipMaker--a web server for aligning two genomic DNA sequences.PipMaker——一个用于比对两个基因组DNA序列的网络服务器。
Genome Res. 2000 Apr;10(4):577-86. doi: 10.1101/gr.10.4.577.
7
Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast.内含子预测测试揭示了酵母减数分裂调控基因中的新剪接位点、可变剪接的mRNA和新内含子。
Nucleic Acids Res. 2000 Apr 15;28(8):1700-6. doi: 10.1093/nar/28.8.1700.
8
Frequent alternative splicing of human genes.人类基因频繁的可变剪接。
Genome Res. 1999 Dec;9(12):1288-93. doi: 10.1101/gr.9.12.1288.
9
ASDB: database of alternatively spliced genes.ASDB：可变剪接基因数据库。
Nucleic Acids Res. 2000 Jan 1;28(1):296-7. doi: 10.1093/nar/28.1.296.

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验