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水溶液中DNA三联体的构象分析。通过360兆赫兹的1H核磁共振研究胸苷酰基-(3'-5')-胸苷酰基-(3'-5')-2'-脱氧腺苷,即d(T-T-A)。

Conformational analysis of a DNA triplet in aqueous solution. Thymidylyl-(3'-5')-thymidylyl-(3'-5')-2'-deoxyadenosine, d(T-T-A), studied by 1H nuclear magnetic resonance at 360 MHz.

作者信息

Altona C, Van Boom J H, Haasnoot C A

出版信息

Eur J Biochem. 1976 Dec 11;71(2):557-62. doi: 10.1111/j.1432-1033.1976.tb11145.x.

DOI:10.1111/j.1432-1033.1976.tb11145.x
PMID:1009965
Abstract

The proton signals of a 50 mM solution of thymidylyl-(3'-5')-thymidylyl-(3'-5')-2'-deoxyadenosine, d(T-T-A), in 2H2O at 65 degrees C and p2H=7.4, were detected by nuclear magnetic resonance at 360 MHz. Complete assignment of the 21 ribose proton signals was achieved by extensive decoupling experiments and computer simulations. The coupling constant data show that the ribose rings prefer to adopt the S (2'-endo) conformation. The presence of a substantial amount of a right handed helical structure of the d(-T-A) fragment is indicated from chemical shift considerations. The molecule displays a high degree of conformational purity along the sugar-phosphate backbone.

摘要

在65℃、p2H = 7.4的重水(2H2O)中,通过360兆赫的核磁共振检测了50毫摩尔/升的胸苷酰基 -(3'-5')-胸苷酰基 -(3'-5')-2'-脱氧腺苷,即d(T-T-A)溶液的质子信号。通过广泛的去耦实验和计算机模拟,实现了对21个核糖质子信号的完全归属。耦合常数数据表明,核糖环更倾向于采取S(2'-内型)构象。从化学位移考虑表明,d(-T-A)片段存在大量右手螺旋结构。该分子沿糖 - 磷酸主链表现出高度的构象纯度。

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引用本文的文献

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Loopstructures in synthetic oligodeoxynucleotides.合成寡脱氧核苷酸中的环结构。
Nucleic Acids Res. 1980 Jan 11;8(1):169-81. doi: 10.1093/nar/8.1.169.
2
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Nucleic Acids Res. 1983 Aug 25;11(16):5691-9. doi: 10.1093/nar/11.16.5691.