• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

少动鞘氨醇单胞菌UT26卤代烷脱卤酶中催化三联体的鉴定。

Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.

作者信息

Hynková K, Nagata Y, Takagi M, Damborský J

机构信息

Department of Environmental Chemistry and Ecotoxicology, Masaryk University, Brno, Czech Republic.

出版信息

FEBS Lett. 1999 Mar 5;446(1):177-81. doi: 10.1016/s0014-5793(99)00199-4.

DOI:10.1016/s0014-5793(99)00199-4
PMID:10100638
Abstract

The haloalkane dehalogenase from Sphingomonas paucimobilis UT26 (LinB) is the enzyme involved in the gamma-hexachlorocyclohexane degradation. This enzyme hydrolyses a broad range of halogenated aliphatic compounds via an alkyl-enzyme intermediate. LinB is believed to belong to the family of alpha/beta-hydrolases which employ a catalytic triad, i.e. nucleophile-histidine-acid, during the catalytic reaction. The position of the catalytic triad within the sequence of LinB was probed by a site-directed mutagenesis. The catalytic triad residues of the haloalkane dehalogenase LinB are proposed to be D108, H272 and E132. The topological location of the catalytic acid (E132) is after the beta-strand six which corresponds to the location of catalytic acid in the pancreatic lipase, but not in the haloalkane dehalogenase of Xanthobacter autotrophicus GJ10 which contains the catalytic acid after the beta-strand seven.

摘要

少动鞘氨醇单胞菌UT26的卤代烷脱卤酶(LinB)是参与γ-六氯环己烷降解的酶。该酶通过烷基-酶中间体水解多种卤代脂肪族化合物。LinB被认为属于α/β-水解酶家族,在催化反应中使用催化三联体,即亲核试剂-组氨酸-酸。通过定点诱变探究了催化三联体在LinB序列中的位置。卤代烷脱卤酶LinB的催化三联体残基被认为是D108、H272和E132。催化酸(E132)的拓扑位置在β-链六之后,这与胰脂肪酶中催化酸的位置相对应,但与自养黄色杆菌GJ10的卤代烷脱卤酶不同,后者的催化酸在β-链七之后。

相似文献

1
Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.少动鞘氨醇单胞菌UT26卤代烷脱卤酶中催化三联体的鉴定。
FEBS Lett. 1999 Mar 5;446(1):177-81. doi: 10.1016/s0014-5793(99)00199-4.
2
Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.少动鞘氨醇单胞菌UT26卤代烷脱卤酶的晶体结构
Biochemistry. 2000 Nov 21;39(46):14082-6. doi: 10.1021/bi001539c.
3
Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.少动鞘氨醇单胞菌UT26中卤代烷脱卤酶LinB底物特异性的定量分析
Biochemistry. 2005 Mar 8;44(9):3390-401. doi: 10.1021/bi047912o.
4
Catalytic mechanism of the maloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.少动鞘氨醇单胞菌UT26中卤代烷脱卤酶LinB的催化机制
J Biol Chem. 2003 Nov 14;278(46):45094-100. doi: 10.1074/jbc.M307056200. Epub 2003 Sep 1.
5
Construction and characterization of histidine-tagged haloalkane dehalogenase (LinB) of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26.来自降解γ-六氯环己烷的少动鞘氨醇单胞菌UT26的新型底物类别的组氨酸标签卤代烷脱卤酶(LinB)的构建与表征
Protein Expr Purif. 1999 Nov;17(2):299-304. doi: 10.1006/prep.1999.1143.
6
Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB.通过卤代烷脱卤酶LinB的累积诱变重建分枝杆菌脱卤酶Rv2579。
Appl Environ Microbiol. 2003 Apr;69(4):2349-55. doi: 10.1128/AEM.69.4.2349-2355.2003.
7
Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205.利用γ-六氯环己烷的鞘氨醇单胞菌属MI1205中卤代烷脱卤酶LinB对β-六氯环己烷的降解作用
Arch Microbiol. 2007 Oct;188(4):313-25. doi: 10.1007/s00203-007-0251-8. Epub 2007 May 22.
8
Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26.少动鞘氨醇单胞菌UT26的卤代烷脱卤酶LinB对β-六氯环己烷的降解作用
Appl Environ Microbiol. 2005 Apr;71(4):2183-5. doi: 10.1128/AEM.71.4.2183-2185.2005.
9
Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues.少动鞘氨醇单胞菌UT26来源的卤代烷脱卤酶LinB在0.95埃分辨率下的晶体结构:催化残基的动力学
Biochemistry. 2004 Feb 3;43(4):870-8. doi: 10.1021/bi034748g.
10
Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates.少动鞘氨醇单胞菌UT26来源的卤代烷脱卤酶LinB:溴化底物脱卤作用的X射线晶体学研究
Biochemistry. 2003 Sep 2;42(34):10104-12. doi: 10.1021/bi027280a.

引用本文的文献

1
Comprehensive review on Haloalkane dehalogenase (LinB): a β-hexachlorocyclohexane (HCH) degrading enzyme.全氟辛酸(PFOA)和全氟辛烷磺酸(PFOS)的污染问题已引起了人们的广泛关注,因为它们具有持久性、生物蓄积性和毒性等特点。
Arch Microbiol. 2024 Aug 14;206(9):380. doi: 10.1007/s00203-024-04105-1.
2
Evolution of bioluminescence in Anthozoa with emphasis on Octocorallia.珊瑚纲生物发光的进化,重点是八放珊瑚亚纲。
Proc Biol Sci. 2024 Apr 30;291(2021):20232626. doi: 10.1098/rspb.2023.2626. Epub 2024 Apr 24.
3
Potential of Microbial Communities to Perform Dehalogenation Processes in Natural and Anthropogenically Modified Environments-A Metagenomic Study.
微生物群落于自然和人为改造环境中进行脱卤过程的潜力——一项宏基因组学研究
Microorganisms. 2023 Jun 29;11(7):1702. doi: 10.3390/microorganisms11071702.
4
Structural and biochemical studies of the glucuronoyl esterase CE15A illuminate its interaction with lignocellulosic components.木葡聚糖酯酶 CE15A 的结构和生化研究阐明了其与木质纤维素成分的相互作用。
J Biol Chem. 2019 Dec 27;294(52):19978-19987. doi: 10.1074/jbc.RA119.011435. Epub 2019 Nov 18.
5
A puzzling homology: a brittle star using a putative cnidarian-type luciferase for bioluminescence.一个令人费解的同源性:一种脆星使用假定的刺胞动物型荧光素酶进行生物发光。
Open Biol. 2017 Apr;7(4). doi: 10.1098/rsob.160300.
6
Kinetic and sequence-structure-function analysis of LinB enzyme variants with β- and δ-hexachlorocyclohexane.LinB酶变体与β-和δ-六氯环己烷的动力学及序列-结构-功能分析
PLoS One. 2014 Jul 30;9(7):e103632. doi: 10.1371/journal.pone.0103632. eCollection 2014.
7
Emergent decarboxylase activity and attenuation of α/β-hydrolase activity during the evolution of methylketone biosynthesis in tomato.在番茄中甲基酮生物合成的演化过程中脱羧酶活性的突发和α/β-水解酶活性的衰减。
Plant Cell. 2012 Apr;24(4):1596-607. doi: 10.1105/tpc.111.093997. Epub 2012 Apr 20.
8
Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation.微生物降解六氯环己烷的生物化学及生物修复展望。
Microbiol Mol Biol Rev. 2010 Mar;74(1):58-80. doi: 10.1128/MMBR.00029-09.
9
Structure-function studies on the active site of the coelenterazine-dependent luciferase from Renilla.海肾腔肠素依赖性荧光素酶活性位点的结构-功能研究
Protein Sci. 2008 Apr;17(4):725-35. doi: 10.1110/ps.073355508.
10
N-acetylanthranilate amidase from Arthrobacter nitroguajacolicus Rü61a, an alpha/beta-hydrolase-fold protein active towards aryl-acylamides and -esters, and properties of its cysteine-deficient variant.来自嗜硝化节杆菌Rü61a的N-乙酰邻氨基苯甲酸酰胺酶,一种对芳基酰胺和酯具有活性的α/β水解酶折叠蛋白,及其半胱氨酸缺陷变体的特性。
J Bacteriol. 2006 Dec;188(24):8430-40. doi: 10.1128/JB.01085-06. Epub 2006 Oct 13.