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基于催化位点和调节位点复合性质概念的酶活性变构调节模型。

The enzyme activity allosteric regulation model based on the composite nature of catalytic and regulatory sites concept.

作者信息

Drozdov-Tikhomirov L N, Skurida G I, Alexandrov A A

机构信息

Institute of Molecular Genetics, Russian Academy of Sciences, Moscow.

出版信息

J Biomol Struct Dyn. 1999 Feb;16(4):917-29. doi: 10.1080/07391102.1999.10508302.

Abstract

A new kinetic model of enzymatic catalysis is proposed, which postulates that enzyme solutions are equilibrium systems of oligomers differing in the number of subunits and in the mode of their assembly. It is suggested that the catalytic and regulatory sites of allosteric enzymes are of composite nature and appear as a result of subunits joining. Two possible joining modes are postulated at each oligomerization step. Catalytic site may arise on oligomer formed only by one of these modes. Effector acts by fastening together components of certain oligomeric form and increases the life time of this form. It leads to a shift of oligomer equilibrium and increases a proportion of effector-binding oligomers. Effectors-activators bind the oligomers carrying composite catalytic sites and effectors-inhibitors bind the oligomers, which do not carry active catalytic sites. Thus, catalytic activity control in such system is explained by effector-induced changes of a catalytic sites number, but not of a catalytic site activity caused by changes of subunit's tertiary structure. The postulates of the model do not contradict available experimental data and lead to a new type of general rate equation, which allows to describe and understand the specific kinetic behavior of allosteric enzymes as well as Michaelis type enzymes. All known rate equations of allosteric The equation was tested by modeling the kinetics of human erythrocyte phosphofructokinase. It enabled to reproduce quantitatively the 66 kinetic curves experimentally obtained for this enzyme under different reaction conditions.

摘要

提出了一种新的酶催化动力学模型,该模型假定酶溶液是亚基数量及其组装方式不同的寡聚体的平衡系统。研究表明,别构酶的催化和调节位点具有复合性质,是亚基结合的结果。在每个寡聚化步骤中假定有两种可能的结合模式。催化位点可能仅在由这些模式之一形成的寡聚体上出现。效应物通过将某些寡聚形式的组分固定在一起而起作用,并增加这种形式的寿命。这导致寡聚体平衡的移动,并增加了效应物结合寡聚体的比例。效应物激活剂结合携带复合催化位点的寡聚体,效应物抑制剂结合不携带活性催化位点的寡聚体。因此,这种系统中的催化活性控制是由效应物诱导的催化位点数量的变化来解释的,而不是由亚基三级结构变化引起的催化位点活性的变化来解释的。该模型的假设与现有实验数据不矛盾,并导致一种新型的通用速率方程,该方程允许描述和理解别构酶以及米氏型酶的特定动力学行为。通过对人红细胞磷酸果糖激酶的动力学进行建模,对该方程进行了测试。它能够定量再现该酶在不同反应条件下实验获得的66条动力学曲线。

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