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水与螺旋主链极性基团之间的相互作用:螺旋倾向性的一个重要决定因素。

Interaction between water and polar groups of the helix backbone: an important determinant of helix propensities.

作者信息

Luo P, Baldwin R L

机构信息

Biochemistry Department, Beckman Center, Stanford University Medical Center, Stanford, CA 94305-5307, USA.

出版信息

Proc Natl Acad Sci U S A. 1999 Apr 27;96(9):4930-5. doi: 10.1073/pnas.96.9.4930.

Abstract

We report an enthalpic factor involved in determining helix propensities of nonpolar amino acids. Thermal unfolding curves of the five 13-residue peptides, Ac-KA4XA4KGY-NH2 (X = Ala, Leu, Ile, Val, Gly), have been measured by using CD in water/trifluoroethanol (TFE) mixtures. The peptide helix contents show that the rank order of helix propensities changes with temperature: although Ala has the highest helix propensity at 0 degrees C in all TFE concentrations, it is lower than Leu, Ile, and Val at 50 degrees C in 20% TFE. This change is attributed to shielding by nonpolar side chains of the interaction between water and polar groups in the helix backbone for the following reasons. (i) Helix content is directly related to helix propensity for these designed peptides because side-chain-side-chain interactions are absent. (ii) The change in rank order with temperature is enthalpic in origin: in water, the apparent enthalpy of helix formation calculated from the thermal unfolding curves varies widely among the five peptides and has the same rank order as the helix propensities at 0 degrees C. The rank order does not result from burial of nonpolar surface area because the calculated heat capacity change (DeltaCp) on helix formation is opposite in sign from the expected DeltaCp. (iii) A nonpolar side chain can exclude water from interacting with helix polar groups, according to calculations of water-accessible surface area, and the polar interaction between water and peptide polar groups is entirely enthalpic, as shown by amide transfer data.

摘要

我们报道了一个与非极性氨基酸螺旋倾向决定相关的焓因素。通过在水/三氟乙醇(TFE)混合物中使用圆二色性(CD)测量了五条13个残基的肽Ac-KA4XA4KGY-NH2(X = Ala、Leu、Ile、Val、Gly)的热解链曲线。肽的螺旋含量表明,螺旋倾向的排序随温度变化:尽管在所有TFE浓度下,Ala在0℃时具有最高的螺旋倾向,但在20% TFE中50℃时它低于Leu、Ile和Val。这种变化归因于螺旋主链中极性基团与水之间的相互作用被非极性侧链屏蔽,原因如下:(i)对于这些设计的肽,螺旋含量与螺旋倾向直接相关,因为不存在侧链-侧链相互作用。(ii)排序随温度的变化源于焓:在水中,根据热解链曲线计算的螺旋形成的表观焓在这五条肽中变化很大,并且与0℃时的螺旋倾向具有相同的排序。这种排序不是由非极性表面积的埋藏导致的,因为计算得到的螺旋形成时的热容变化(ΔCp)的符号与预期的ΔCp相反。(iii)根据可及水表面积的计算,非极性侧链可以排除水与螺旋极性基团的相互作用,并且水与肽极性基团之间的极性相互作用完全是焓性的,如酰胺转移数据所示。

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