• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

金属-磷酸盐相互作用的理论研究:Li+、Na+、K+、Be++、Mg++和Ca++与H2PO4-及(CH3O)2PO2-的相互作用:对核酸溶剂化的意义

Theoretical studies of metal-phosphate interactions: interaction of Li+, Na+, K+, Be++, Mg++, and Ca++ with H2PO4- and (CH3O)2PO2-: implications for nucleic acid solvation.

作者信息

Marynick D S, Schaefer H F

出版信息

Proc Natl Acad Sci U S A. 1975 Oct;72(10):3794-8. doi: 10.1073/pnas.72.10.3794.

DOI:10.1073/pnas.72.10.3794
PMID:1060064
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC433081/
Abstract

Model phosphate-metal solvation complexes have been studied by ab-initio self-consistent-field techniques. The complexes studied include (RO)2PO2-(R = H or CH3) with Li+, Na+, K+, Be++, Mg++, Ca++, H2O, and Cl-. The geometries of the complexes were chosen to approximate reasonable model solvation complexes for phosphate groups in a nucleic acid environment. Calculated energies of formation vary as Be++ greater than Mg++ greater than Ca++ greater than Li+ greater than Na+ greater than K+ for all isostructural complexes, consistent with experimental binding trends. These results suggest that site binding of this type can successfully account for the relative specificities of ion binding in polynucleotides and other phosphate-containing molecules.

摘要

通过从头算自洽场技术研究了模型磷酸盐-金属溶剂化络合物。所研究的络合物包括(RO)2PO2-(R = H或CH3)与Li+、Na+、K+、Be++、Mg++、Ca++、H2O和Cl-形成的络合物。选择这些络合物的几何结构以近似核酸环境中磷酸基团合理的模型溶剂化络合物。对于所有同构络合物,计算得到的形成能变化规律为Be++大于Mg++大于Ca++大于Li+大于Na+大于K+,这与实验结合趋势一致。这些结果表明,这种类型的位点结合能够成功解释多核苷酸和其他含磷分子中离子结合的相对特异性。

相似文献

1
Theoretical studies of metal-phosphate interactions: interaction of Li+, Na+, K+, Be++, Mg++, and Ca++ with H2PO4- and (CH3O)2PO2-: implications for nucleic acid solvation.金属-磷酸盐相互作用的理论研究:Li+、Na+、K+、Be++、Mg++和Ca++与H2PO4-及(CH3O)2PO2-的相互作用:对核酸溶剂化的意义
Proc Natl Acad Sci U S A. 1975 Oct;72(10):3794-8. doi: 10.1073/pnas.72.10.3794.
2
Metal-nucleotide interactions: crystal structures of alkali (Li+, Na+, K+) and alkaline earth (Ca2+, Mg2+) metal complexes of adenosine 2'-monophosphate.金属-核苷酸相互作用:腺苷2'-单磷酸的碱金属(Li+、Na+、K+)和碱土金属(Ca2+、Mg2+)金属配合物的晶体结构
J Biomol Struct Dyn. 1998 Feb;15(4):803-21. doi: 10.1080/07391102.1998.10508994.
3
Comprehensive study on the solvation of mono- and divalent metal cations: Li+, Na+, K+, Be2+, Mg2+ and Ca2+.单价和二价金属阳离子溶剂化的综合研究:Li⁺、Na⁺、K⁺、Be²⁺、Mg²⁺和Ca²⁺。
J Phys Chem A. 2008 Dec 18;112(50):12944-53. doi: 10.1021/jp8032325.
4
Vibrational analysis of nucleic acids. I. The phosphodiester group in dimethyl phosphate model compounds: (CH3O)2PO2-, (CD3O)2PO2-, and (13CH3O)2PO2-.核酸的振动分析。I. 磷酸二甲酯模型化合物中的磷酸二酯基团:(CH3O)2PO2-、(CD3O)2PO2- 和 (13CH3O)2PO2- 。
Biophys J. 1994 Jan;66(1):225-35. doi: 10.1016/S0006-3495(94)80767-2.
5
Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water coordination on the structure of glycine and zwitterionic glycine.金属离子(Li⁺、Na⁺、K⁺、Mg²⁺、Ca²⁺、Ni²⁺、Cu²⁺和Zn²⁺)及水配位对甘氨酸和两性离子甘氨酸结构的影响
J Phys Chem A. 2006 Feb 9;110(5):1960-7. doi: 10.1021/jp054119b.
6
Theoretical study of interaction of urate with li(+), na(+), k(+), be(2+), mg(2+), and ca(2+) metal cations.尿酸盐与锂(+)、钠(+)、钾(+)、铍(2+)、镁(2+)和钙(2+)金属阳离子相互作用的理论研究。
J Phys Chem A. 2006 May 11;110(18):6139-44. doi: 10.1021/jp0603379.
7
The first solvation shell of magnesium and calcium ions in a model nucleic acid environment: an ab initio study.模型核酸环境中镁离子和钙离子的第一溶剂化层:一项从头算研究。
J Biomol Struct Dyn. 1995 Aug;13(1):167-80. doi: 10.1080/07391102.1995.10508828.
8
The effects of monovalent cations Li+, Na+, K+, NH4+, Rb+ and Cs+ on the solid and solution structures of the nucleic acid components. Metal ion binding and sugar conformation.单价阳离子Li+、Na+、K+、NH4+、Rb+和Cs+对核酸成分的固体和溶液结构的影响。金属离子结合与糖构象。
J Biomol Struct Dyn. 1992 Oct;10(2):345-65. doi: 10.1080/07391102.1992.10508652.
9
The interpretation of Mg(2+) binding isotherms for nucleic acids using Poisson-Boltzmann theory.运用泊松-玻尔兹曼理论对核酸的Mg(2+)结合等温线进行解释。
J Mol Biol. 1999 Dec 17;294(5):1135-47. doi: 10.1006/jmbi.1999.3334.
10
A Silver-Specific DNAzyme with a New Silver Aptamer and Salt-Promoted Activity.一种具有新型银适配体和盐促进活性的银特异性脱氧核酶。
Biochemistry. 2017 Apr 11;56(14):1955-1962. doi: 10.1021/acs.biochem.6b01131. Epub 2017 Mar 31.

引用本文的文献

1
Assembly and biological functions of metal-biomolecule network nanoparticles formed by metal-phosphonate coordination.由金属膦酸盐配位形成的金属-生物分子网络纳米颗粒的组装及生物学功能
Sci Adv. 2024 Dec 13;10(50):eads9542. doi: 10.1126/sciadv.ads9542.
2
Establishment of a method to measure the intracellular potassium ion concentration of brain tissue using a simple device.利用一种简单装置建立测量脑组织细胞内钾离子浓度的方法。
AIMS Neurosci. 2024 Aug 26;11(3):275-288. doi: 10.3934/Neuroscience.2024018. eCollection 2024.
3
A theoretical study of Na+ and Mg+2 binding to the carbonyl oxygen of N-methyl acetamide.关于钠离子(Na⁺)和镁离子(Mg²⁺)与N-甲基乙酰胺羰基氧结合的理论研究。
Biophys J. 1978 Dec;24(3):729-38. doi: 10.1016/S0006-3495(78)85416-2.

本文引用的文献

1
BINDING OF MN2+ TO NUCLEIC ACIDS.锰离子(Mn²⁺)与核酸的结合
J Chem Phys. 1965 Jan 1;42:43-53. doi: 10.1063/1.1695717.
2
Enzymic synthesis of deoxyribonucleic acid.脱氧核糖核酸的酶促合成
Biochim Biophys Acta. 1956 Jul;21(1):197-8. doi: 10.1016/0006-3002(56)90127-5.
3
Dependence of the melting temperature of DNA on salt concentration.DNA熔解温度对盐浓度的依赖性。
Biopolymers. 1965;3(2):195-208. doi: 10.1002/bip.360030207.
4
Enzymes activated by monovalent cations.由单价阳离子激活的酶。
Science. 1970 May 15;168(3933):789-95. doi: 10.1126/science.168.3933.789.
5
New RNA polymerase from Escherichia coli infected with bacteriophage T7.来自被噬菌体T7感染的大肠杆菌的新型RNA聚合酶。
Nature. 1970 Oct 17;228(5268):227-31. doi: 10.1038/228227a0.
6
Protein-nucleic acid interactions. 3. Cation effect on binding strength and specificity.蛋白质-核酸相互作用。3. 阳离子对结合强度和特异性的影响。
Biochemistry. 1967 Oct;6(10):3307-14. doi: 10.1021/bi00862a041.