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模型核酸环境中镁离子和钙离子的第一溶剂化层:一项从头算研究。

The first solvation shell of magnesium and calcium ions in a model nucleic acid environment: an ab initio study.

作者信息

Deerfield D W, Pedersen L G

机构信息

Pittsburgh Supercomputing Center, PA 15213, USA.

出版信息

J Biomol Struct Dyn. 1995 Aug;13(1):167-80. doi: 10.1080/07391102.1995.10508828.

Abstract

The interaction of organophosphate anions with divalent metal ions is central to many biological catalytic events. While experimental structural studies can give insight into the likely geometries that can be adopted, quantum mechanics allows for a more complete exploration of the competing forms. Ab initio quantum mechanical calculations have been performed on a series of complexes comprised of dimethyl phosphate, a divalent metal ion (either Mg(II) or Ca(II)) and water of hydration. An additional series of complexes were studied that included a Cl(I) ion to provide for charge neutrality. The most stable orientation of the hydrated metal ion complexed with the phosphate anion occurs when the metal ion is in a unidentate, rather than bidentate, orientation. The question of whether the divalent metal ion is located in the phosphinyl (-PO2(-)-) plane depends on the identity of the divalent metal ion and on the charge state of the complex.

摘要

有机磷酸根阴离子与二价金属离子的相互作用是许多生物催化过程的核心。虽然实验结构研究可以深入了解可能采用的几何构型,但量子力学能够更全面地探索竞争形式。已对一系列由磷酸二甲酯、二价金属离子(Mg(II) 或 Ca(II))和水化水组成的配合物进行了从头算量子力学计算。还研究了另一系列包含 Cl(I) 离子以实现电荷中性的配合物。当金属离子处于单齿而非双齿取向时,与磷酸根阴离子络合的水合金属离子的最稳定取向出现。二价金属离子是否位于亚磷酰基 (-PO2(-)-) 平面取决于二价金属离子的身份以及配合物的电荷状态。

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