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通过对所有驻留时间直方图进行同步拟合来对多通道记录进行快速动力学分析。

Rapid kinetic analysis of multichannel records by a simultaneous fit to all dwell-time histograms.

作者信息

Csanády L

机构信息

Laboratory of Cardiac/Membrane Physiology, The Rockefeller University, 1230 York Avenue, Box 297, New York, New York 10021, USA.

出版信息

Biophys J. 2000 Feb;78(2):785-99. doi: 10.1016/S0006-3495(00)76636-7.

DOI:10.1016/S0006-3495(00)76636-7
PMID:10653791
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1300681/
Abstract

A method is presented for rapidly extracting single-channel transition rate constants from patch-clamp recordings containing signals from several channels. The procedure is based on a simultaneous fit of the observed dwell-time distributions for all conductance levels, using a maximum likelihood approach. This algorithm allows estimation of single-channel rate constants in cases where more advanced methods may be impractical because of their extremely long computational time. A correction is included for the limited time resolution of the recording system, according to theory developed by Roux and Sauvé (Biophys. J. 48:149-158, 1985), by accounting for the impact of undetected transitions on the dwell-time distributions, and by introducing an improved practical implementation of a fixed dead time for the case of more than one channel. This feature allows application of the method to noisy data, after filtering. A computer program implementing the method is tested successfully on a variety of simulated multichannel current traces.

摘要

本文提出了一种从包含多个通道信号的膜片钳记录中快速提取单通道转换速率常数的方法。该程序基于使用最大似然法对所有电导水平下观察到的驻留时间分布进行同时拟合。在更先进的方法由于计算时间极长而不切实际的情况下,此算法允许估计单通道速率常数。根据Roux和Sauvé(《生物物理学杂志》48:149 - 158, 1985)提出的理论,通过考虑未检测到的转换对驻留时间分布的影响,并针对多个通道的情况引入固定死时间的改进实际实现方式,对记录系统有限的时间分辨率进行了校正。此特性允许在滤波后将该方法应用于噪声数据。实现该方法的计算机程序已在各种模拟多通道电流迹线上成功测试。

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Rapid kinetic analysis of multichannel records by a simultaneous fit to all dwell-time histograms.通过对所有驻留时间直方图进行同步拟合来对多通道记录进行快速动力学分析。
Biophys J. 2000 Feb;78(2):785-99. doi: 10.1016/S0006-3495(00)76636-7.
2
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本文引用的文献

1
How powerful is the dwell-time analysis of multichannel records?多通道记录的驻留时间分析有多强大?
J Membr Biol. 1998 Sep 1;165(1):19-35. doi: 10.1007/s002329900417.
2
Activation of Shaker potassium channels. III. An activation gating model for wild-type and V2 mutant channels.摇椅钾通道的激活。III. 野生型和V2突变体通道的激活门控模型。
J Gen Physiol. 1998 Feb;111(2):313-42. doi: 10.1085/jgp.111.2.313.
3
Activation of Shaker potassium channels. II. Kinetics of the V2 mutant channel.Shaker钾通道的激活。II. V2突变通道的动力学
J Gen Physiol. 1998 Feb;111(2):295-311. doi: 10.1085/jgp.111.2.295.
4
Activation of shaker potassium channels. I. Characterization of voltage-dependent transitions.震荡器钾通道的激活。I. 电压依赖性转变的特征
J Gen Physiol. 1998 Feb;111(2):271-94. doi: 10.1085/jgp.111.2.271.
5
Two-dimensional components and hidden dependencies provide insight into ion channel gating mechanisms.二维组件和隐藏的依赖性有助于深入了解离子通道门控机制。
Biophys J. 1997 Jun;72(6):2524-44. doi: 10.1016/S0006-3495(97)78897-0.
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Maximum likelihood estimation of aggregated Markov processes.聚合马尔可夫过程的最大似然估计
Proc Biol Sci. 1997 Mar 22;264(1380):375-83. doi: 10.1098/rspb.1997.0054.
7
Estimating single-channel kinetic parameters from idealized patch-clamp data containing missed events.从包含漏检事件的理想化膜片钳数据中估计单通道动力学参数。
Biophys J. 1996 Jan;70(1):264-80. doi: 10.1016/S0006-3495(96)79568-1.
8
Shaker potassium channel gating. III: Evaluation of kinetic models for activation.震颤钾通道门控。III:激活动力学模型的评估。
J Gen Physiol. 1994 Feb;103(2):321-62. doi: 10.1085/jgp.103.2.321.
9
Shaker potassium channel gating. II: Transitions in the activation pathway.震颤器钾通道门控。II:激活途径中的转变。
J Gen Physiol. 1994 Feb;103(2):279-319. doi: 10.1085/jgp.103.2.279.
10
Shaker potassium channel gating. I: Transitions near the open state.摇椅式钾通道门控。I:开放状态附近的转变。
J Gen Physiol. 1994 Feb;103(2):249-78. doi: 10.1085/jgp.103.2.249.