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由IncW质粒pSa编码的抗限制蛋白Ard(C型)与杂交质粒RP4的TraC1引发酶的“蛋白质转运”结构域具有高度相似性。

Antirestriction protein Ard (Type C) encoded by IncW plasmid pSa has a high similarity to the "protein transport" domain of TraC1 primase of promiscuous plasmid RP4.

作者信息

Belogurov A A, Delver E P, Agafonova O V, Belogurova N G, Lee L Y, Kado C I

机构信息

Department of Genetic Engineering, National Cardiological Research and Development Center, Moscow, 121552, Russia.

出版信息

J Mol Biol. 2000 Mar 3;296(4):969-77. doi: 10.1006/jmbi.1999.3493.

Abstract

The IncW plasmid pSa contains the gene ard encoding an antirestriction function that is specific for type I restriction and modification systems. The nucleotide sequence of ard was determined and an appropriate polypeptide of about 33 kDa was identified in Escherichia coli T7 expression system. Analysis of deduced amino acid sequence of Ard encoded by pSa revealed that this protein has no significant similarities with the known Ard proteins (ArdA and ArdB types) except the "antirestriction" motif (14 amino acid residues in length) conserved for all known Ard proteins. This finding suggests that pSa Ard may be classified as a new type of Ard proteins which we designated ArdC. The remarkable feature of ArdC is that it has a high degree of similarity (about 38 % identity) to the N-terminal region of RP4 TraC1 primase which includes about 300 amino acid residues and seems to be essential for binding to the single-stranded DNA and TraC1 protein transport to the recipient cells during the conjugal transfer of plasmid DNA. ArdC also binds to single-stranded DNA. In addition, this protein is able in vitro to protect the single-stranded but not double-stranded plasmid DNA against the activity of type II restriction endonuclease HhaI that cleaves both single and double-stranded DNA. We suggest that like TraC1, ArdC would be transported as a result of their interaction with the single-stranded DNA of transferred plasmid strand during conjugative passage through the cell envelope to the recipient bacterium. Such properties of ArdC protein might be useful to protect immediately the incoming single-stranded DNA from the host endonucleases.

摘要

IncW质粒pSa含有ard基因,该基因编码一种针对I型限制与修饰系统的抗限制功能。测定了ard的核苷酸序列,并在大肠杆菌T7表达系统中鉴定出一种约33 kDa的合适多肽。对pSa编码的Ard推导氨基酸序列的分析表明,除了所有已知Ard蛋白保守的“抗限制”基序(长度为14个氨基酸残基)外,该蛋白与已知的Ard蛋白(ArdA和ArdB类型)没有显著相似性。这一发现表明,pSa Ard可能被归类为一种新型的Ard蛋白,我们将其命名为ArdC。ArdC的显著特征是它与RP4 TraC1引发酶的N端区域具有高度相似性(约38%的同一性),该区域包含约300个氨基酸残基,似乎对于在质粒DNA的接合转移过程中与单链DNA结合以及TraC1蛋白转运到受体细胞至关重要。ArdC也与单链DNA结合。此外,这种蛋白在体外能够保护单链而非双链质粒DNA免受II型限制内切酶HhaI的活性影响,HhaI可切割单链和双链DNA。我们认为,与TraC1一样,ArdC会由于它们在通过细胞包膜向受体细菌的接合传递过程中与转移质粒链的单链DNA相互作用而被转运。ArdC蛋白的这些特性可能有助于立即保护进入的单链DNA免受宿主内切酶的作用。

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