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动脉病毒缺陷干扰RNA基因组的分离与鉴定

Isolation and characterization of an arterivirus defective interfering RNA genome.

作者信息

Molenkamp R, Rozier B C, Greve S, Spaan W J, Snijder E J

机构信息

Department of Virology, Center for Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.

出版信息

J Virol. 2000 Apr;74(7):3156-65. doi: 10.1128/jvi.74.7.3156-3165.2000.

Abstract

Equine arteritis virus (EAV), the type member of the family Arteriviridae, is a single-stranded RNA virus with a positive-stranded genome of approximately 13 kb. EAV uses a discontinuous transcription mechanism to produce a nested set of six subgenomic mRNAs from which its structural genes are expressed. We have generated the first documented arterivirus defective interfering (DI) RNAs by serial undiluted passaging of a wild-type EAV stock in BHK-21 cells. A cDNA copy of the smallest DI RNA (5.6 kb) was cloned. Upon transfection into EAV-infected BHK-21 cells, transcripts derived from this clone (pEDI) were replicated and packaged. Sequencing of pEDI revealed that the DI RNA was composed of three segments of the EAV genome (nucleotides 1 to 1057, 1388 to 1684, and 8530 to 12704) which were fused in frame with respect to the replicase reading frame. Remarkably, this DI RNA has retained all of the sequences encoding the structural proteins. By insertion of the chloramphenicol acetyltransferase reporter gene in the DI RNA genome, we were able to delimitate the sequences required for replication/DI-based transcription and packaging of EAV DI RNAs and to reduce the maximal size of a replication-competent EAV DI RNA to approximately 3 kb.

摘要

马动脉炎病毒(EAV)是动脉炎病毒科的代表成员,是一种单链RNA病毒,其正链基因组约为13 kb。EAV利用不连续转录机制产生一组嵌套的六个亚基因组mRNA,其结构基因由此表达。我们通过在BHK-21细胞中对野生型EAV毒株进行连续未稀释传代,首次产生了有文献记载的动脉炎病毒缺陷干扰(DI)RNA。克隆了最小DI RNA(5.6 kb)的cDNA拷贝。将该克隆(pEDI)的转录本转染到感染EAV的BHK-21细胞后,其被复制并包装。对pEDI的测序显示,DI RNA由EAV基因组的三个片段(核苷酸1至1057、1388至1684以及8530至12704)组成,这些片段相对于复制酶阅读框以框内方式融合。值得注意的是,这种DI RNA保留了所有编码结构蛋白的序列。通过在DI RNA基因组中插入氯霉素乙酰转移酶报告基因,我们能够确定EAV DI RNA复制/基于DI的转录和包装所需的序列,并将具有复制能力的EAV DI RNA的最大大小减少到约3 kb。

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