Goodrum L J, Patel A, Leykam J F, Kieliszewski M J
Ohio State University School of Ophthalmology, Columbus, USA.
Phytochemistry. 2000 May;54(1):99-106. doi: 10.1016/s0031-9422(00)00043-1.
Gum arabic glycoprotein (GAGP) is a large molecular weight, hydroxyproline-rich arabinogalactan-protein (AGP) component of gum arabic. GAGP has a simple, highly biased amino acid composition indicating a repetitive polypeptide backbone. Previous work (Qi, W., Fong, C., Lamport, D.T.A., 1991. Plant Physiology 96, 848), suggested small (approximately 11 residue) repetitive peptide motifs each with three Hyp-arabinoside attachment sites and a single Hyp-arabinogalactan polysaccharide attachment site. We tested that hypothesis by sequence analysis of the GAGP polypeptide after HF-deglycosylation. A family of closely related peptides confirmed the presence of a repetitive 19-residue consensus motif. However, the motif: Ser-Hyp-Hyp-Hyp-Thr-Leu-Ser-Hyp-Ser- Hyp-Thr-Hyp-Thr-Hyp-Hyp-Leu-Gly-Pro-His, was about twice the size anticipated. Thus, judging by Hyp-glycoside profiles of GAGP, the consensus motif contained six Hyp-arabinosides rather than three and two Hyp-polysaccharides rather than one. We inferred the glycosylation sites based on the Hyp contiguity hypothesis which predicts arabinosides on contiguous Hyp residues and arabinogalactan polysaccharides on clustered non-contiguous Hyp residues, i.e. the GAGP motif would consist of arabinosylated contiguous Hyp blocks flanking two central Hyp-polysaccharides. We predict this rigidifies the glycoprotein, enhances the overall symmetry of the glycopeptide motif, and may explain some of the remarkable properties of gum arabic.
阿拉伯树胶糖蛋白(GAGP)是阿拉伯树胶中一种分子量较大、富含羟脯氨酸的阿拉伯半乳聚糖蛋白(AGP)成分。GAGP具有简单且高度偏向的氨基酸组成,表明其具有重复的多肽主链。先前的研究工作(Qi, W., Fong, C., Lamport, D.T.A., 1991. Plant Physiology 96, 848)表明,存在小的(约11个残基)重复肽基序,每个基序有三个Hyp-阿拉伯糖苷连接位点和一个单一的Hyp-阿拉伯半乳聚糖多糖连接位点。我们通过对HF去糖基化后的GAGP多肽进行序列分析来验证这一假设。一组密切相关的肽证实了存在一个重复的19个残基的共有基序。然而,该基序:Ser-Hyp-Hyp-Hyp-Thr-Leu-Ser-Hyp-Ser-Hyp-Thr-Hyp-Thr-Hyp-Hyp-Leu-Gly-Pro-His,大约是预期大小的两倍。因此,从GAGP的Hyp-糖苷谱判断,共有基序包含六个Hyp-阿拉伯糖苷而非三个,以及两个Hyp-多糖而非一个。我们基于Hyp邻接假设推断糖基化位点,该假设预测相邻Hyp残基上的阿拉伯糖苷以及成簇的非相邻Hyp残基上的阿拉伯半乳聚糖多糖,即GAGP基序将由两个中央Hyp-多糖两侧的阿拉伯糖基化相邻Hyp块组成。我们预测这会使糖蛋白刚性化,增强糖肽基序的整体对称性,并可能解释阿拉伯树胶的一些显著特性。