• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过最小二乘边界建模确定沉降系数分布

Determination of the sedimentation coefficient distribution by least-squares boundary modeling.

作者信息

Schuck P, Rossmanith P

机构信息

Molecular Interactions Resource, Bioengineering and Physical Science Program, ORS, National Institutes of Health, Bethesda, Maryland 20892, USA.

出版信息

Biopolymers. 2000 Oct 15;54(5):328-41. doi: 10.1002/1097-0282(20001015)54:5<328::AID-BIP40>3.0.CO;2-P.

DOI:10.1002/1097-0282(20001015)54:5<328::AID-BIP40>3.0.CO;2-P
PMID:10935973
Abstract

A new method is presented for the calculation of apparent sedimentation coefficient distributions g*(s) for the size-distribution analysis of polymers in sedimentation velocity experiments. Direct linear least-squares boundary modeling by a superposition of sedimentation profiles of ideal nondiffusing particles is employed. It can be combined with algebraic noise decomposition techniques for the application to interference optical ultracentrifuge data at low loading concentrations with significant systematic noise components. Because of the use of direct boundary modeling, residuals are available for assessment of the quality of the fits and the consistency of the g*(s) distribution with the experimental data. The method can be combined with regularization techniques based on F statistics, such as used in the program CONTIN, or alternatively, the increment of s values can be adjusted empirically. The method is simple, has advantageous statistical properties, and reveals precise sedimentation coefficients. The new least-squares ls-g*(s) exhibits a very high robustness and resolution if data acquired over a large time interval are analyzed. This can result in a high resolution for large particles, and for samples with a high degree of heterogeneity. Because the method does not require a high frequency of scans, it can also be easily used in experiments with the absorbance optical scanning system. Published 2000 John Wiley & Sons, Inc.

摘要

本文提出了一种新方法,用于计算沉降速度实验中聚合物尺寸分布分析的表观沉降系数分布g*(s)。采用理想非扩散颗粒沉降曲线叠加的直接线性最小二乘边界建模。它可以与代数噪声分解技术相结合,应用于低加载浓度且具有显著系统噪声成分的干涉光学超速离心机数据。由于使用了直接边界建模,可以得到残差,用于评估拟合质量以及g*(s)分布与实验数据的一致性。该方法可以与基于F统计量的正则化技术相结合,如程序CONTIN中所使用的技术,或者也可以凭经验调整s值的增量。该方法简单,具有有利的统计特性,并且能揭示精确的沉降系数。如果分析在较大时间间隔内采集的数据,新的最小二乘ls-g*(s)表现出非常高的稳健性和分辨率。这对于大颗粒以及高度异质性的样品可以产生高分辨率。由于该方法不需要高扫描频率,则也可以很容易地用于吸光光学扫描系统的实验。2000年出版 约翰威立父子出版公司

相似文献

1
Determination of the sedimentation coefficient distribution by least-squares boundary modeling.通过最小二乘边界建模确定沉降系数分布
Biopolymers. 2000 Oct 15;54(5):328-41. doi: 10.1002/1097-0282(20001015)54:5<328::AID-BIP40>3.0.CO;2-P.
2
Sedimentation equilibrium analysis of interference optical data by systematic noise decomposition.通过系统噪声分解对干涉光学数据进行沉降平衡分析。
Anal Biochem. 1999 Aug 1;272(2):199-208. doi: 10.1006/abio.1999.4172.
3
A model for sedimentation in inhomogeneous media. II. Compressibility of aqueous and organic solvents.非均匀介质中沉降的模型。II. 水性溶剂和有机溶剂的可压缩性。
Biophys Chem. 2004 Mar 1;108(1-3):201-14. doi: 10.1016/j.bpc.2003.10.017.
4
A comparison of weight average and direct boundary fitting of sedimentation velocity data for indefinite polymerizing systems.无限聚合体系沉降速度数据的重均法与直接边界拟合的比较
Biophys Chem. 2004 Mar 1;108(1-3):215-30. doi: 10.1016/j.bpc.2003.10.029.
5
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.通过沉降速度超速离心法和Lamm方程建模对大分子进行尺寸分布分析。
Biophys J. 2000 Mar;78(3):1606-19. doi: 10.1016/S0006-3495(00)76713-0.
6
Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems.通过分析超速离心法进行蛋白质的尺寸分布分析:策略及其在模型系统中的应用
Biophys J. 2002 Feb;82(2):1096-111. doi: 10.1016/S0006-3495(02)75469-6.
7
Sedimentation velocity analysis of highly heterogeneous systems.高度异质系统的沉降速度分析
Anal Biochem. 2004 Dec 15;335(2):279-88. doi: 10.1016/j.ab.2004.08.039.
8
Limiting the sedimentation coefficient for sedimentation velocity data analysis: partial boundary modeling and g(s) approaches revisited.限制沉降速度数据分析的沉降系数:重新考察部分边界模型和 g(s)方法。
Anal Biochem. 2011 May 15;412(2):189-202. doi: 10.1016/j.ab.2011.01.035. Epub 2011 Feb 1.
9
Sedimentation velocity, multi-speed method for analyzing polydisperse solutions.沉降速度,用于分析多分散溶液的多速方法。
Biophys Chem. 2004 Mar 1;108(1-3):273-9. doi: 10.1016/j.bpc.2003.10.027.
10
Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition.基于全局隐式质量守恒约束和系统噪声分解的蛋白质相互作用沉降平衡分析。
Anal Biochem. 2004 Mar 15;326(2):234-56. doi: 10.1016/j.ab.2003.12.014.

引用本文的文献

1
Investigation of the Degree of Functionalization and Colloidal Stability of Shell-by-Shell Functionalized TiO Nanoparticles as a Function of Different Phosphonic Acid Chain Lengths.逐层功能化TiO纳米颗粒的功能化程度和胶体稳定性随不同膦酸链长度变化的研究。
Chemistry. 2025 Jul 2;31(37):e202501008. doi: 10.1002/chem.202501008. Epub 2025 Jun 6.
2
Supramolecular Polymer Bottlebrushes: In Situ Assessment of Noncovalent Assemblies in Human Serum by Analytical Ultracentrifugation.超分子聚合物瓶刷:通过分析超速离心法对人血清中非共价组装体进行原位评估。
Macromol Rapid Commun. 2025 May;46(10):e2400890. doi: 10.1002/marc.202400890. Epub 2025 Feb 27.
3
Concomitant formation of protocells and prebiotic compounds under a plausible early Earth atmosphere.
在似是而非的早期地球大气条件下,原细胞和益生元化合物的同时形成。
Proc Natl Acad Sci U S A. 2025 Jan 14;122(2):e2413816122. doi: 10.1073/pnas.2413816122. Epub 2024 Dec 30.
4
Solution biophysics identifies lipid nanoparticle non-sphericity, polydispersity, and dependence on internal ordering for efficacious mRNA delivery.溶液生物物理学确定了脂质纳米颗粒的非球形度、多分散性以及有效mRNA递送对内部有序性的依赖性。
bioRxiv. 2025 Jan 27:2024.12.19.629496. doi: 10.1101/2024.12.19.629496.
5
Reaction hijacking inhibition of Plasmodium falciparum asparagine tRNA synthetase.疟原虫天冬酰胺 tRNA 合成酶的反应劫持抑制。
Nat Commun. 2024 Jan 31;15(1):937. doi: 10.1038/s41467-024-45224-z.
6
Differences in Physico-Chemical Properties and Immunological Response in Nanosimilar Complex Drugs: The Case of Liposomal Doxorubicin.纳米类似复杂药物中物理化学性质和免疫反应的差异:以脂质体多柔比星为例。
Int J Mol Sci. 2023 Sep 2;24(17):13612. doi: 10.3390/ijms241713612.
7
An automated interface for sedimentation velocity analysis in SEDFIT.SEDFIT 中沉降速度分析的自动化接口。
PLoS Comput Biol. 2023 Sep 5;19(9):e1011454. doi: 10.1371/journal.pcbi.1011454. eCollection 2023 Sep.
8
Sonication-assisted liquid phase exfoliation of two-dimensional CrTe under inert conditions.惰性条件下二维CrTe的超声辅助液相剥离
Ultrason Sonochem. 2023 Aug;98:106528. doi: 10.1016/j.ultsonch.2023.106528. Epub 2023 Jul 19.
9
An automated interface for sedimentation velocity analysis in SEDFIT.SEDFIT中沉降速度分析的自动化界面。
bioRxiv. 2023 May 14:2023.05.14.540690. doi: 10.1101/2023.05.14.540690.
10
PEG-Lipids: Quantitative Study of Unimers and Aggregates Thereof by the Methods of Molecular Hydrodynamics.PEG-脂质:分子流体力学方法对单体及其聚集体的定量研究。
Anal Chem. 2023 Jul 18;95(28):10795-10802. doi: 10.1021/acs.analchem.3c01999. Epub 2023 Jul 7.