Rabenstein B, Ullmann G M, Knapp E W
Institut für Chemie, Fachbereich Biologie, Chemie, Pharmazie, Freie Universität Berlin, Takustrasse 6, D-14195 Berlin, Germany.
Biochemistry. 2000 Aug 29;39(34):10487-96. doi: 10.1021/bi000413c.
The electron transfer between the two quinones Q(A) and Q(B) in the bacterial photosynthetic reaction center (bRC) is coupled to a conformational rearrangement. Recently, the X-ray structures of the dark-adapted and light-exposed bRC from Rhodobacter sphaeroides were solved, and the conformational changes were characterized structurally. We computed the reaction free energy for the electron transfer from to Q(B) in the X-ray structures of the dark-adapted and light-exposed bRC from Rb. sphaeroides. The computation was done by applying an electrostatic model using the Poisson-Boltzmann equation and Monte Carlo sampling. We accounted for possible protonation changes of titratable groups upon electron transfer. According to our calculations, the reaction energy of the electron transfer from to Q(B) is +157 meV for the dark-adapted and -56 meV for the light-exposed X-ray structure; i.e., the electron transfer is energetically uphill for the dark-adapted structure and downhill for the light-exposed structure. A common interpretation of experimental results is that the electron transfer between and Q(B) is either gated or at least influenced by a conformational rearrangement: A conformation in which the electron transfer from to Q(B) is inactive, identified with the dark-adapted X-ray structure, changes into an electron-transfer active conformation, identified with the light-exposed X-ray structure. This interpretation agrees with our computational results if one assumes that the positive reaction energy for the dark-adapted X-ray structure effectively prevents the electron transfer. We found that the strongly coupled pair of titratable groups Glu-L212 and Asp-L213 binds about one proton in the dark-adapted X-ray structure, where the electron is mainly localized at Q(A), and about two protons in the light-exposed structure, where the electron is mainly localized at Q(B). This finding agrees with recent experimental and theoretical studies. We compare the present results for the bRC from Rb. sphaeroides to our recent studies on the bRC from Rhodopseudomonas viridis. We discuss possible mechanisms for the gated electron transfer from to Q(B) and relate them to theoretical and experimental results.
细菌光合反应中心(bRC)中两个醌Q(A)和Q(B)之间的电子转移与构象重排相耦合。最近,解出了球形红杆菌暗适应和光照下bRC的X射线结构,并从结构上对构象变化进行了表征。我们计算了球形红杆菌暗适应和光照下bRC的X射线结构中从到Q(B)的电子转移反应自由能。计算是通过应用使用泊松-玻尔兹曼方程的静电模型和蒙特卡罗采样来完成的。我们考虑了电子转移时可滴定基团可能的质子化变化。根据我们的计算,对于暗适应的X射线结构,从到Q(B)的电子转移反应能量为+157毫电子伏,对于光照的X射线结构为-56毫电子伏;即,对于暗适应结构,电子转移在能量上是上坡的,而对于光照结构是下坡的。对实验结果的一种常见解释是,和Q(B)之间的电子转移要么是门控的,要么至少受构象重排的影响:一种其中从到Q(B)的电子转移无活性的构象,与暗适应的X射线结构一致,转变为一种电子转移活性构象,与光照的X射线结构一致。如果假设暗适应的X射线结构的正反应能量有效地阻止了电子转移,那么这种解释与我们的计算结果一致。我们发现,在暗适应的X射线结构中,强耦合的可滴定基团对Glu-L212和Asp-L213结合约一个质子,此时电子主要定域在Q(A);而在光照结构中结合约两个质子,此时电子主要定域在Q(B)。这一发现与最近的实验和理论研究一致。我们将球形红杆菌bRC的当前结果与我们最近对绿假单胞菌bRC的研究进行了比较。我们讨论了从到Q(B)的门控电子转移的可能机制,并将它们与理论和实验结果联系起来。