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虾传染性皮下和造血组织坏死病毒与蚊虫短体病毒属病毒相关。

Infectious hypodermal and hematopoietic necrosis virus of shrimp is related to mosquito brevidensoviruses.

作者信息

Shike H, Dhar A K, Burns J C, Shimizu C, Jousset F X, Klimpel K R, Bergoin M

机构信息

Department of Pediatrics, University of California, San Diego, La Jolla, California, 92093-0830, USA.

出版信息

Virology. 2000 Nov 10;277(1):167-77. doi: 10.1006/viro.2000.0589.

Abstract

We purified and sequenced infectious hypodermal and hematopoietic necrosis virus (IHHNV), a small DNA virus of shrimp, from wild Penaeus stylirostris. The virion has a buoyant density of 1.45 as determined by cesium chloride gradient. Analysis of 3873 nucleotides of the viral genome revealed three large open reading frames (ORFs) and parts of the noncoding termini of the viral genome. The left, mid, and right ORFs on the complementary (plus) strand have potential coding capacities of 666 amino acids (aa) (75.77 kDa), 363 aa (42.11 kDa), and 329 aa (37.48 kDa), respectively. The overall genomic organization is similar to that of the mosquito brevidensoviruses. The left ORF most likely encodes the major nonstructural (NS) protein (NS-1) since it contains conserved replication initiator motifs and NTP-binding and helicase domains similar to those in NS-1 from all other parvoviruses. The IHHNV putative NS-1 shares the highest aa sequence homology with the NS-1 of mosquito brevidensoviruses, Aedes densovirus and Aedes albopictus parvovirus. A search for putative splicing sites revealed that the N-terminal region of NS-1 is very likely located in a small ORF upstream of the left ORF. The right ORF is presumed to encode structural polypeptides (VPs), as in other parvoviruses. Two putative promoters, located upstream of the left and right ORFs, are presumed to regulate expression of NS and VP genes, respectively. Thus, IHHNV is closely related to densoviruses of the genus Brevidensovirus in the family Parvoviridae, and we therefore propose to rename this virus Penaeus stylirostris densovirus (PstDNV).

摘要

我们从野生的长角对虾中纯化并测序了传染性皮下和造血组织坏死病毒(IHHNV),这是一种对虾的小型DNA病毒。通过氯化铯梯度离心测定,该病毒粒子的浮力密度为1.45。对病毒基因组3873个核苷酸的分析揭示了三个大的开放阅读框(ORF)以及病毒基因组非编码末端的部分序列。互补(正)链上的左、中、右ORF分别具有编码666个氨基酸(aa)(75.77 kDa)、363个aa(42.11 kDa)和329个aa(37.48 kDa)的潜在能力。其整体基因组结构与蚊短小浓核病毒相似。左ORF最有可能编码主要的非结构(NS)蛋白(NS-1),因为它包含保守的复制起始基序以及与所有其他细小病毒的NS-1中相似的NTP结合和螺旋酶结构域。IHHNV假定的NS-1与蚊短小浓核病毒、埃及伊蚊浓核病毒和白纹伊蚊细小病毒的NS-1具有最高的氨基酸序列同源性。对假定剪接位点的搜索表明,NS-1的N端区域很可能位于左ORF上游的一个小ORF中。如其他细小病毒一样,右ORF推测编码结构多肽(VP)。位于左、右ORF上游的两个假定启动子分别推测调控NS和VP基因的表达。因此,IHHNV与细小病毒科短小浓核病毒属的浓核病毒密切相关,我们因此提议将该病毒重新命名为长角对虾浓核病毒(PstDNV)。

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