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鉴定一种与养殖凡纳滨对虾大规模死亡相关的具有核定位特征的新型 Solinvivirus

Identification of a Novel Solinvivirus with Nuclear Localization Associated with Mass Mortalities in Cultured Whiteleg Shrimp ().

机构信息

Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Carretera Ensenada-Tijuana No. 3918, Zona Playitas, Ensenada 22860, Baja California, Mexico.

Aquaculture Pathology Laboratory, School of Animal & Comparative Biomedical Sciences, The University of Arizona, Tucson, AZ 85721, USA.

出版信息

Viruses. 2022 Oct 9;14(10):2220. doi: 10.3390/v14102220.

Abstract

The emergence and spread of disease-causing viruses in shrimp aquaculture is not uncommon. Since 2016, unusual mortalities have been affecting the Brazilian shrimp industry and we have associated these unusual mortalities with a novel variant of infectious myonecrosis virus (IMNV). The transcriptome analysis of these diseased shrimp showed an additional divergent viral sequence that we have assigned to the family . The novel virus has been tentatively termed solinvivirus (PvSV) (GenBank accession: OP265432). The full-length genome of the PvSV is 10.44 kb (excluding the poly A tail) and codes for a polyprotein of 3326 aa. Five conserved domains coding for a helicase, RdRp, calicivirus coat protein, G-patch and tegument protein were identified. The genome organization of the PvSV is similar to other ( virus 1) solinvivirus. A unique feature of this virus that differs from other members of the is the presence of putative nuclear localization signals. The tissue tropism of this virus is wide, infecting cells of the hepatopancreas, gastrointestinal tract, lymphoid organ and muscle tissue. Another unique feature is that it is the only RNA virus of penaeid shrimp that shows a nuclear localization by in situ hybridization. The PvSV has a wide distribution in Brazil and has been found in the states of Maranhão State (Perizes de Baixo), Piaui State (Mexeriqueira), Ceará State (Camocim, Jaguaruana, Aracati and Alto Santo) and Pará State where it has been detected in coinfections with IMNV. The diagnostic methods developed here (real-time RT-PCR and in situ hybridization) are effective for the detection of the pathogen and should be employed to limit its spread. Furthermore, the identification of the PvSV shows the increasing host range of the relatively new family .

摘要

虾类养殖中致病病毒的出现和传播并不罕见。自 2016 年以来,巴西虾类养殖业一直受到异常死亡率的影响,我们将这些异常死亡率与一种新型传染性肌肉坏死病毒(IMNV)变体相关联。对这些患病虾的转录组分析显示了一个额外的不同病毒序列,我们将其分配到家族。这种新型病毒已被暂时命名为 solinvivirus(PvSV)(GenBank 登录号:OP265432)。PvSV 的全长基因组为 10.44kb(不包括 poly A 尾),编码一个 3326 个氨基酸的多蛋白。鉴定出 5 个保守结构域,分别编码一个解旋酶、RdRp、杯状病毒外壳蛋白、G-补丁和膜蛋白。PvSV 的基因组组织与其他(病毒 1)solinvivirus 相似。该病毒的一个独特特征是与其他成员不同,存在推定的核定位信号。该病毒的组织嗜性广泛,感染肝胰腺、胃肠道、淋巴器官和肌肉组织的细胞。另一个独特的特征是,它是唯一一种具有核定位的 RNA 病毒通过原位杂交显示核定位。PvSV 在巴西分布广泛,在马拉尼昂州(Perizes de Baixo)、皮奥伊州(Mexeriqueira)、塞阿拉州(Camocim、Jaguaruana、Aracati 和 Alto Santo)和帕拉州都有发现,在与 IMNV 的合并感染中也有发现。这里开发的诊断方法(实时 RT-PCR 和原位杂交)可有效检测病原体,应加以利用以限制其传播。此外,PvSV 的鉴定表明相对较新的家族宿主范围不断扩大。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d488/9610163/c72e4f1572b9/viruses-14-02220-g001.jpg

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