Michaux J, Catzeflis F
Laboratoire de Paléontologie, Université de Montpellier 2, Montpellier, 34095, France.
Mol Phylogenet Evol. 2000 Nov;17(2):280-93. doi: 10.1006/mpev.2000.0849.
Phylogenetic relationships among 40 extant species of rodents, with an emphasis on the taxonomic sampling of Muridae and Dipodidae, were studied using sequences of the nuclear protein-coding gene LCAT (lecithin cholesterol acyl transferase). Analysis of 804 bp from the exonic regions of LCAT confirmed many traditional groupings in and around Muridae. A strong support was found for the families Muridae (represented by 29 species) and Dipodidae (5 species). Compared with Sciuridae, Gliridae, and Caviomorpha, the Dipodidae family appeared the closest relative of Muridae, confirming the suprafamilial Myodonta concept. Within the speciose family Muridae, the first branching leads to the fossorial Spalacinae and semifossorial Rhyzomyinae. The remaining components of Muridae appear as a polytomy from which are issued Sigmodontinae, Calomyscinae, Arvicolinae, Cricetinae, Mystromyinae, Nesomyinae, and some Dendromurinae (Steatomys and Dendromus). This phylogeny is interpreted as the result of a bushlike radiation at the end of the early Miocene, leading to emergence of most living subfamilies. The separation between three additional taxa, Murinae, Gerbillinae, and "Acomyinae" (which comprises the genera Acomys, Deomys, Uranomys, and Lophuromys), has occurred more recently from a common ancestor issued from the main basal radiation. As previously shown by other molecular studies, the vlei rats, Otomyinae, are nested within Old World Murinae. In the same way, the zokors, Myospalacinae, appear strongly nested within the hamsters, Cricetinae. Finally, we propose a sister group relationship between Malagasy Nesomyinae and south African Mystromyinae.
利用核蛋白编码基因LCAT(卵磷脂胆固醇酰基转移酶)序列,研究了40种现存啮齿动物之间的系统发育关系,重点是鼠科和跳鼠科的分类取样。对LCAT外显子区域804 bp的分析证实了鼠科及其周边的许多传统分类群。鼠科(由29个物种代表)和跳鼠科(5个物种)得到了有力支持。与松鼠科、睡鼠科和豚鼠形亚目相比,跳鼠科似乎是鼠科最近的亲属,证实了超科级的肌齿亚目概念。在物种丰富的鼠科中,第一个分支导致了穴居的竹鼠亚科和半穴居的竹鼠亚科。鼠科的其余部分呈现为一个多分支,从中产生了棉鼠亚科、短尾鼩亚科、田鼠亚科、仓鼠亚科、非洲沼鼠亚科、非洲攀鼠亚科和一些梳齿鼠亚科(肥尾沙鼠属和非洲森林小鼠属)。这种系统发育被解释为早中新世末期类似灌木丛状辐射的结果,导致了大多数现存亚科的出现。另外三个分类单元,鼠亚科、沙鼠亚科和“非洲刺毛鼠亚科”(包括非洲刺毛鼠属、荒漠攀鼠属、长尾攀鼠属和冠攀鼠属)之间的分离,是最近从主要基部辐射产生的一个共同祖先中发生的。如先前其他分子研究所示,沼泽鼠亚科的沼鼠嵌套在旧世界鼠亚科中。同样,鼢鼠亚科的鼢鼠也强烈嵌套在仓鼠亚科的仓鼠中。最后,我们提出马达加斯加非洲攀鼠亚科和南非非洲沼鼠亚科之间是姐妹群关系。