Edwards R A, Whittaker M M, Whittaker J W, Baker E N, Jameson G B
Centre for Structural Biology, Institutes of Fundamental Sciences and Molecular BioSciences, Massey University, Palmerston North, New Zealand.
Biochemistry. 2001 Jan 9;40(1):15-27. doi: 10.1021/bi0018943.
Tyrosine 34 and glutamine 146 are highly conserved outer sphere residues in the mononuclear manganese active site of Escherichia coli manganese superoxide dismutase. Biochemical and spectroscopic characterization of site-directed mutants has allowed functional characterization of these residues in the wild-type (wt) enzyme. X-ray crystallographic analysis of three mutants (Y34F, Q146L, and Q146H) reveal subtle changes in the protein structures. The Y34A mutant, as well as the previously reported Y34F mutant, retained essentially the full superoxide dismutase activity of the wild-type enzyme, and the X-ray crystal structure of Y34F manganese superoxide dismutase shows that mutation of this strictly conserved residue has only minor effects on the positions of active site residues and the organized water in the substrate access funnel. Mutation of the outer sphere solvent pocket residue Q146 has more dramatic effects. The Q146E mutant is isolated as an apoprotein lacking dismutase activity. Q146L and Q146H mutants retain only 5-10% of the dismutase activity of the wild-type enzyme. The absorption and circular dichroism spectra of the Q146H mutant resemble corresponding data for the superoxide dismutase from a hyperthermophilic archaeon, Pyrobaculum aerophilum, which is active in both Mn and Fe forms. Interestingly, the iron-substituted Q146H protein also exhibits low dismutase activity, which increases at lower pH. Mutation of glutamine 146 disrupts the hydrogen-bonding network in the active site and has a greater effect on protein structure than does the Y34F mutant, with rearrangement of the tyrosine 34 and tryptophan 128 side chains.
酪氨酸34和谷氨酰胺146是大肠杆菌锰超氧化物歧化酶单核锰活性位点中高度保守的外球残基。定点突变体的生化和光谱表征使得能够对野生型(wt)酶中的这些残基进行功能表征。对三个突变体(Y34F、Q146L和Q146H)的X射线晶体学分析揭示了蛋白质结构的细微变化。Y34A突变体以及先前报道的Y34F突变体保留了野生型酶基本上全部的超氧化物歧化酶活性,并且Y34F锰超氧化物歧化酶的X射线晶体结构表明,这个严格保守残基的突变对活性位点残基的位置以及底物进入通道中的有序水分子只有微小影响。外球溶剂口袋残基Q146的突变具有更显著的影响。Q146E突变体被分离为缺乏歧化酶活性的脱辅基蛋白。Q146L和Q146H突变体仅保留野生型酶5 - 10%的歧化酶活性。Q146H突变体的吸收光谱和圆二色光谱类似于嗜热古菌嗜气栖热菌超氧化物歧化酶的相应数据,该酶在锰和铁形式下均有活性。有趣的是,铁取代的Q146H蛋白也表现出低歧化酶活性,在较低pH值下活性增加。谷氨酰胺146的突变破坏了活性位点中的氢键网络,并且对蛋白质结构的影响比Y34F突变体更大,导致酪氨酸34和色氨酸128侧链重排。