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STOCHSIM:随机生物分子过程的建模

STOCHSIM: modelling of stochastic biomolecular processes.

作者信息

Le Novère N, Shimizu T S

机构信息

Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK.

出版信息

Bioinformatics. 2001 Jun;17(6):575-6. doi: 10.1093/bioinformatics/17.6.575.

Abstract

STOCHSIM is a stochastic simulator for chemical reactions. Molecules are represented as individual software objects that react according to probabilities derived from concentrations and rate constants. Version 1.2 of STOCHSIM provides a novel cross-platform graphical interface written in Perl/Tk. A simple two-dimensional spatial structure has also been implemented, in which nearest-neighbour interactions of molecules in a 2-D lattice can be simulated.

摘要

STOCHSIM是一款用于化学反应的随机模拟器。分子被表示为单独的软件对象,它们根据由浓度和速率常数得出的概率进行反应。STOCHSIM 1.2版本提供了一个用Perl/Tk编写的全新跨平台图形界面。还实现了一种简单的二维空间结构,其中可以模拟二维晶格中分子的近邻相互作用。

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