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XPA-RPA对DNA弯曲和解旋的双重检查探测:DNA修复中的一种结构功能

Double-check probing of DNA bending and unwinding by XPA-RPA: an architectural function in DNA repair.

作者信息

Missura M, Buterin T, Hindges R, Hübscher U, Kaspárková J, Brabec V, Naegeli H

机构信息

Institute of Pharmacology and Toxicology, University of Zürich-Tierspital, August Forel-Strasse 1, 8008 Zürich, Switzerland.

出版信息

EMBO J. 2001 Jul 2;20(13):3554-64. doi: 10.1093/emboj/20.13.3554.

Abstract

The multiprotein factor composed of XPA and replication protein A (RPA) is an essential subunit of the mammalian nucleotide excision repair system. Although XPA-RPA has been implicated in damage recognition, its activity in the DNA repair pathway remains controversial. By replacing DNA adducts with mispaired bases or non-hybridizing analogues, we found that the weak preference of XPA and RPA for damaged substrates is entirely mediated by indirect readout of DNA helix conformations. Further screening with artificially distorted substrates revealed that XPA binds most efficiently to rigidly bent duplexes but not to single-stranded DNA. Conversely, RPA recognizes single-stranded sites but not backbone bending. Thus, the association of XPA with RPA generates a double-check sensor that detects, simultaneously, backbone and base pair distortion of DNA. The affinity of XPA for sharply bent duplexes, characteristic of architectural proteins, is not compatible with a direct function during recognition of nucleotide lesions. Instead, XPA in conjunction with RPA may constitute a regulatory factor that monitors DNA bending and unwinding to verify the damage-specific localization of repair complexes or control their correct three-dimensional assembly.

摘要

由XPA和复制蛋白A(RPA)组成的多蛋白因子是哺乳动物核苷酸切除修复系统的一个重要亚基。尽管XPA-RPA与损伤识别有关,但其在DNA修复途径中的活性仍存在争议。通过用错配碱基或非杂交类似物取代DNA加合物,我们发现XPA和RPA对受损底物的微弱偏好完全是由DNA螺旋构象的间接读出介导的。用人工扭曲的底物进行进一步筛选发现,XPA最有效地结合到刚性弯曲的双链体上,而不结合单链DNA。相反,RPA识别单链位点,但不识别主链弯曲。因此,XPA与RPA的结合产生了一种双重检查传感器,可同时检测DNA的主链和碱基对扭曲。XPA对急剧弯曲的双链体的亲和力是结构蛋白的特征,这与核苷酸损伤识别过程中的直接功能不相符。相反,XPA与RPA结合可能构成一种调节因子,监测DNA的弯曲和解旋,以验证修复复合物的损伤特异性定位或控制其正确的三维组装。

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