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细胞色素P450cam及其定点突变体活性位点中的氢键相互作用。

Hydrogen-bonding interactions in the active sites of cytochrome P450cam and its site-directed mutants.

作者信息

Deng T, Macdonald I D, Simianu M C, Sykora M, Kincaid J R, Sligar S G

机构信息

Department of Chemistry, Marquette University, Wehr Chemistry Building, P.O. Box1881 (535 North 14th Street, 53233), Milwaukee, Wisconsin 53201-1881, USA.

出版信息

J Am Chem Soc. 2001 Jan 17;123(2):269-78. doi: 10.1021/ja001517d.

Abstract

Resonance Raman spectroscopy is applied to the cyanide adducts of cytochrome P450cam and its T252A and D251N site-directed mutants, both in their substrate-free and camphor-bound forms, to probe active-site heme structure and, in particular, interactions of the FeCN fragment with potential active-site H-bond donors. In contrast to the ferrous CO and ferric NO adducts, which form only essentially linear (slightly distorted) FeXY fragments, the spectra of the ferric CN(-) adducts provide clear evidence the for the existence of an additional, rather highly bent, conformer; that is, the cyanide complexes form both linear and bent conformers in both the substrate-free and substrate-bound forms. Formation of this bent conformer is most reasonably attributed to the presence of off-axis H-bond donors, which induce distortion on the FeCN fragment but not the FeCO and FeNO fragments, which are poorer H-bond acceptors. For all three proteins, the substrate-free form exhibits a complex spectral pattern which arises because one of the modes associated with the FeCN fragment is coupled with two heme macrocycle deformation modes. Significantly, no evidence for such coupling is observed in the spectra of the camphor-bound forms. While various unknown factors may possibly give rise to selective activation of such coupling in the substrate-free derivative, given the known facts about the active-site architecture of this enzyme, a plausible explanation is that the bent conformer is oriented toward the water-filled substrate-binding site in the substrate-free form, but oppositely, toward the proposed proton delivery shuttle, in the substrate-bound form. Sensitivity of the FeCN modes to H(2)O/D(2)O exchange in the two camphor-bound mutants, which is apparently absent for the camphor-bound native protein, is most reasonably attributed to the known presence of extra water in the active sites of these mutants.

摘要

共振拉曼光谱法被应用于细胞色素P450cam及其T252A和D251N定点突变体的氰化物加合物,这些加合物处于无底物形式和与樟脑结合的形式,以探测活性位点血红素结构,特别是FeCN片段与潜在活性位点氢键供体的相互作用。与仅形成基本线性(略有扭曲)的FeXY片段的亚铁CO和铁NO加合物不同,铁氰根(-)加合物的光谱提供了明确证据,证明存在另一种高度弯曲的构象异构体;也就是说,氰化物配合物在无底物形式和与底物结合的形式中均形成线性和弯曲构象异构体。这种弯曲构象异构体的形成最合理地归因于离轴氢键供体的存在,这些供体在FeCN片段上引起扭曲,但在FeCO和FeNO片段上不会引起扭曲,因为FeCO和FeNO片段是较差的氢键受体。对于所有三种蛋白质,无底物形式呈现出复杂的光谱模式,这是因为与FeCN片段相关的一种模式与两种血红素大环变形模式耦合。值得注意的是,在与樟脑结合的形式的光谱中未观察到这种耦合的证据。虽然各种未知因素可能会导致在无底物衍生物中选择性激活这种耦合,但鉴于关于该酶活性位点结构的已知事实,一个合理的解释是,弯曲构象异构体在无底物形式中朝向充满水的底物结合位点,但在与底物结合的形式中则相反,朝向拟议的质子传递穿梭体。两种与樟脑结合的突变体中FeCN模式对H₂O/D₂O交换的敏感性,而与樟脑结合的天然蛋白质显然不存在这种敏感性,最合理地归因于已知这些突变体活性位点中存在额外的水。

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