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通过逆扩散法生长的晶体在0.94埃分辨率下的四方晶系鸡蛋白溶菌酶结构。

Structure of tetragonal hen egg-white lysozyme at 0.94 A from crystals grown by the counter-diffusion method.

作者信息

Sauter C, Otálora F, Gavira J A, Vidal O, Giegé R, García-Ruiz J M

机构信息

UPR 9002, Département Mécanismes et Molécules de la Synthèse Protéique et Cristallogenèse, Institut de Biologie Moléculaire et Cellulaire, 15 Rue René Descartes, F-67084 Strasbourg CEDEX, France.

出版信息

Acta Crystallogr D Biol Crystallogr. 2001 Aug;57(Pt 8):1119-26. doi: 10.1107/s0907444901008873. Epub 2001 Jul 23.

DOI:10.1107/s0907444901008873
PMID:11468395
Abstract

Very high quality crystals of tetragonal hen egg-white lysozyme were grown in the Advanced Protein Crystallization Facility (APCF) on board the Space Shuttle using a modified free-interface diffusion (FID) reactor designed ad hoc to have a longer diffusion path. This design allows the performance of true counter-diffusion experiments. Crystals were obtained under the classical chemical conditions defined 50 y ago with NaCl as a crystallizing agent and acetate pH 4.5 as a buffer. Counter-diffusion crystallization allows a "physical" instead of chemical optimization of growth conditions: indeed, this method screens for the best supersaturation conditions in a single trial and yields crystals of very high quality. A complete diffraction data set was collected at atomic resolution from one of these crystals using synchrotron radiation at the DESY-EMBL beamlines. The overall R(merge) on intensities in the resolution range 31-0.94 A was 5.2% and the data were 98.9% complete. Refinement was carried out with the programs CNS and SHELX97 to a final crystallographic R factor of 12.26% for 72 390 reflections. A mean standard uncertainty in the atomic positions of 0.024 A was estimated from inversion of blocked least-squares matrices. 22 side chains show alternate conformations and the loop 59-75 adopts in the same crystal packing two conformations that were observed for either triclinic or tetragonal lysozyme in previous high-resolution studies. In addition to 255 water molecules, the crystallizing agent (one hexacoordinated sodium ion and five chloride anions) participates in the ordered lysozyme hydration shell.

摘要

利用专门设计的具有更长扩散路径的改良自由界面扩散(FID)反应器,在航天飞机上的高级蛋白质结晶设施(APCF)中培养出了高质量的四方晶系鸡蛋清溶菌酶晶体。这种设计使得真正的反向扩散实验得以进行。晶体是在50年前定义的经典化学条件下获得的,以氯化钠作为结晶剂,醋酸盐pH 4.5作为缓冲剂。反向扩散结晶允许对生长条件进行“物理”而非化学优化:实际上,这种方法在一次试验中筛选出最佳的过饱和条件,并产生高质量的晶体。使用DESY - EMBL光束线的同步辐射,从其中一个晶体收集了原子分辨率的完整衍射数据集。在31 - 0.94 Å分辨率范围内,强度的总体R(merge)为5.2%,数据完整性为98.9%。使用CNS和SHELX97程序进行精修,对于72390个反射,最终晶体学R因子为12.26%。通过对阻塞最小二乘矩阵求逆,估计原子位置的平均标准不确定度为0.024 Å。22条侧链呈现交替构象,并且在相同的晶体堆积中,环59 - 75采用了两种构象,这两种构象在之前的高分辨率研究中曾在三斜晶系或四方晶系溶菌酶中观察到。除了255个水分子外,结晶剂(一个六配位钠离子和五个氯离子)参与了有序的溶菌酶水合壳层。

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