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关于活性位点组氨酸在大肠杆菌6-磷酸葡萄糖胺脱氨酶催化和变构调节中的多种功能作用

On the multiple functional roles of the active site histidine in catalysis and allosteric regulation of Escherichia coli glucosamine 6-phosphate deaminase.

作者信息

Montero-Morán G M, Lara-González S, Alvarez-Añorve L I, Plumbridge J A, Calcagno M L

机构信息

Departamento de Bioquímica, Laboratorio de Fisicoquímica y Diseño de Proteínas, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), P. O. Box 70-159, Mexico City 04510, D.F., México.

出版信息

Biochemistry. 2001 Aug 28;40(34):10187-96. doi: 10.1021/bi0105835.

Abstract

The active site of glucosamine-6-phosphate deaminase (EC 3.5.99.6, formerly 5.3.1.10) from Escherichia coli was first characterized on the basis of the crystallographic structure of the enzyme bound to the competitive inhibitor 2-amino-2-deoxy-glucitol 6-phosphate. The structure corresponds to the R allosteric state of the enzyme; it shows the side-chain of His143 in close proximity to the O5 atom of the inhibitor. This arrangement suggests that His143 could have a role in the catalysis of the ring-opening step of glucosamine 6-phosphate whose alpha-anomer is the true substrate. The imidazole group of this active-site histidine contacts the carboxy groups from Glu148 and Asp141, via its Ndelta1 atom [Oliva et al. (1995) Structure 3, 1323-1332]. These interactions change in the T state because the side chain of Glu148 moves toward the allosteric site, leaving at the active site the dyad Asp141-His143 [Horjales et al. (1999) Structure 7, 527-536]. In this research, a dual approach using site-directed mutagenesis and controlled chemical modification of histidine residues has been used to investigate the role of the active-site histidine. Our results support a multifunctional role of His143; in the forward reaction, it is involved in the catalysis of the ring-opening step of the substrate, glucosamine 6-P. In the reverse reaction, the substrate fructose 6-P binds in its open chain, carbonylic form. The role of His143 in the binding of both glucosamine 6-P and reaction intermediates in their extended-chain forms was demonstrated by binding experiments using the reaction intermediate analogue, 2-amino-2-deoxy-D-glucitol 6-phosphate. His143 was also shown to be a critical residue for the conformational coupling between active and allosteric sites. From the pH dependence of the reactivity of the active site histidine to diethyl dicarbonate, we observed a pK(a) change of 1.2 units to the acid side when the enzyme undergoes the allosteric T to R transition during which the side chain of Glu148 moves toward the active site. The kinetic study of the Glu148-Gln mutant deaminase shows that the loss of the carboxy group and its replacement with the corresponding amide modifies the k(cat) versus pH profile of the enzyme, suggesting that the catalytic step requiring the participation of His143 has become rate-limiting. This, in turn, indicates that the interaction Glu148-His143 in the wild-type enzyme in the R state contributes to make the enzyme functional over a wide pH range.

摘要

来自大肠杆菌的氨基葡萄糖-6-磷酸脱氨酶(EC 3.5.99.6,原5.3.1.10)的活性位点最初是根据与竞争性抑制剂2-氨基-2-脱氧葡糖醇6-磷酸结合的酶的晶体结构来表征的。该结构对应于酶的R变构状态;它显示His143的侧链与抑制剂的O5原子紧邻。这种排列表明His143可能在6-磷酸氨基葡萄糖的开环步骤催化中起作用,其α-异头物是真正的底物。该活性位点组氨酸的咪唑基团通过其Nδ1原子与Glu148和Asp141的羧基接触[奥利瓦等人(1995年)《结构》3,1323 - 1332]。这些相互作用在T状态下会发生变化,因为Glu148的侧链向变构位点移动,在活性位点留下Asp141 - His143二元组[霍尔亚莱斯等人(1999年)《结构》7,527 - 536]。在本研究中,采用了定点诱变和组氨酸残基的可控化学修饰的双重方法来研究活性位点组氨酸的作用。我们的结果支持His143具有多功能作用;在正向反应中,它参与底物6-磷酸氨基葡萄糖的开环步骤催化。在逆向反应中,底物6-磷酸果糖以其开链羰基形式结合。使用反应中间类似物2-氨基-2-脱氧-D-葡糖醇6-磷酸的结合实验证明了His143在6-磷酸氨基葡萄糖及其延伸链形式的反应中间体结合中的作用。His143也被证明是活性位点和变构位点之间构象偶联的关键残基。从活性位点组氨酸对焦碳酸二乙酯反应性的pH依赖性来看,当酶经历变构T到R转变(在此期间Glu148的侧链向活性位点移动)时,我们观察到pK(a)向酸性侧变化了1.2个单位。对Glu148 - Gln突变脱氨酶的动力学研究表明,羧基的丧失及其被相应酰胺取代改变了酶的k(cat)与pH的关系曲线,表明需要His143参与的催化步骤已成为限速步骤。这反过来表明野生型酶在R状态下Glu148 - His143的相互作用有助于使酶在较宽的pH范围内发挥功能。

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