• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

理解氧酯和硫酯的相对酰基转移反应活性:过渡态离域效应的计算分析

Understanding the relative acyl-transfer reactivity of oxoesters and thioesters: computational analysis of transition state delocalization effects.

作者信息

Yang W, Drueckhammer D G

机构信息

Department of Chemistry, State University at Stony Brook, Stony Brook, New York 11794-3400, USA.

出版信息

J Am Chem Soc. 2001 Nov 7;123(44):11004-9. doi: 10.1021/ja010726a.

DOI:10.1021/ja010726a
PMID:11686705
Abstract

Computational studies were performed in an effort to understand the relative reactivity of oxoesters and thioesters in nucleophilic acyl transfer reactions. Transition state models were developed for the reactions of methyl acetate and methyl thioacetate with hydroxide, ammonia, and methylcyanoacetate carbanion. Quantum mechanical calculations based on these models reproduced experimental observations that oxoesters and thioesters have similar reactivity toward hydroxide while thioesters are about 100-fold and at least 2000-fold more reactive than oxoesters toward amine and carbanion nucleophiles, respectively. NBO analysis was performed to elucidate the role of electron delocalization in reactant and transition state stabilization. These calculations indicate similar losses of delocalization energy for the oxoester and thioester in going from the reactants to the transition state in reaction with hydroxide while the loss of delocalization energy is significantly greater for the oxoester in reactions with the other nucleophiles. Bond rotational analysis of the transition states for the reactions with hydroxide and ammonia provide support for an important role of the p(X) --> sigma(C-Nu) interaction (X = O or S of the oxoester or thioester respectively, Nu = nucleophile) in governing the reactivity of oxoesters and thioesters in nucleophilic acyl substitution.

摘要

为了理解氧酯和硫酯在亲核酰基转移反应中的相对反应活性,进行了计算研究。针对乙酸甲酯和硫代乙酸甲酯与氢氧化物、氨和氰基乙酸甲酯碳负离子的反应,建立了过渡态模型。基于这些模型的量子力学计算重现了实验观察结果:氧酯和硫酯对氢氧化物具有相似的反应活性,而硫酯对胺和亲核碳负离子的反应活性分别比氧酯高约100倍和至少2000倍。进行了自然键轨道(NBO)分析,以阐明电子离域在反应物和过渡态稳定化中的作用。这些计算表明,在与氢氧化物反应时,从反应物到过渡态,氧酯和硫酯的离域能损失相似,而在与其他亲核试剂反应时,氧酯的离域能损失明显更大。对与氢氧化物和氨反应的过渡态进行键旋转分析,为p(X)→σ(C-Nu)相互作用(X分别为氧酯或硫酯的O或S,Nu为亲核试剂)在决定氧酯和硫酯在亲核酰基取代反应中的反应活性方面的重要作用提供了支持。

相似文献

1
Understanding the relative acyl-transfer reactivity of oxoesters and thioesters: computational analysis of transition state delocalization effects.理解氧酯和硫酯的相对酰基转移反应活性:过渡态离域效应的计算分析
J Am Chem Soc. 2001 Nov 7;123(44):11004-9. doi: 10.1021/ja010726a.
2
Computational studies of the aminolysis of oxoesters and thioesters in aqueous solution.水溶液中氧酯和硫酯氨解反应的计算研究。
Org Lett. 2000 Dec 28;2(26):4133-6. doi: 10.1021/ol006691l.
3
Mechanistic investigations of the hydrolysis of amides, oxoesters and thioesters via kinetic isotope effects and positional isotope exchange.通过动力学同位素效应和位置同位素交换对酰胺、氧酯和硫酯水解的机理研究。
Biochim Biophys Acta. 2015 Nov;1854(11):1756-67. doi: 10.1016/j.bbapap.2014.12.016. Epub 2014 Dec 24.
4
Nucleophilic degradation of fenitrothion insecticide and performance of nucleophiles: a computational study.硝硫磷杀虫剂的亲核降解及亲核试剂的性能:计算研究。
J Phys Chem A. 2012 Mar 15;116(10):2536-46. doi: 10.1021/jp2100057. Epub 2012 Mar 5.
5
o-Quinone methide as alkylating agent of nitrogen, oxygen, and sulfur nucleophiles. The role of H-bonding and solvent effects on the reactivity through a DFT computational study.邻苯醌甲基化物作为氮、氧和硫亲核试剂的烷基化剂。通过密度泛函理论计算研究氢键和溶剂效应对反应活性的作用。
J Am Chem Soc. 2001 Aug 29;123(34):8366-77. doi: 10.1021/ja010433h.
6
Theoretical investigations of the reactivity of verdoheme analogues: opening of the planar macrocycle by amide, dimethyl amide, and hydroxide nucleophiles to form helical biliverdin type complexes.Verdohaem类似物反应活性的理论研究:通过酰胺、二甲基酰胺和氢氧根亲核试剂打开平面大环以形成螺旋型胆绿素类配合物。
J Inorg Biochem. 2006 Sep;100(9):1449-61. doi: 10.1016/j.jinorgbio.2006.04.010. Epub 2006 May 5.
7
Förster Resonance Energy Transfer Assay for Investigating the Reactivity of Thioesters in Biochemistry and Native Chemical Ligation.用于研究生物化学和天然化学连接中硫酯反应活性的荧光共振能量转移测定法。
JACS Au. 2023 May 1;3(5):1443-1451. doi: 10.1021/jacsau.3c00095. eCollection 2023 May 22.
8
DFT study on the nucleophilic addition reaction of water and ammonia to the thymine radical cation.水和氨与胸腺嘧啶自由基阳离子亲核加成反应的密度泛函理论研究
J Phys Chem A. 2007 Sep 13;111(36):8857-63. doi: 10.1021/jp0734124. Epub 2007 Aug 21.
9
Enzymatic versus spontaneous S-methyl thioester synthesis in Geotrichum candidum.白地霉中酶促与自发的S-甲基硫酯合成
FEMS Microbiol Lett. 2000 Dec 15;193(2):237-41. doi: 10.1111/j.1574-6968.2000.tb09430.x.
10
Infrared and Raman spectra of S-methyl thioacetate: toward an understanding of the biochemical reactivity of esters of coenzyme A.硫代乙酸甲酯的红外光谱和拉曼光谱:旨在理解辅酶A酯的生化反应活性
Biochemistry. 1982 Apr 13;21(8):1972-6. doi: 10.1021/bi00537a042.

引用本文的文献

1
Halogen Migration in the Photofragmentation of Halothane.氟烷光解过程中的卤素迁移
Molecules. 2025 Jul 9;30(14):2902. doi: 10.3390/molecules30142902.
2
Thioketones as a Simple Route Toward Thioester-Based Materials.硫酮作为一种通往硫酯基材料的简单途径。
Macromol Rapid Commun. 2025 Jul;46(14):e2500076. doi: 10.1002/marc.202500076. Epub 2025 May 19.
3
Thioesters Support Efficient Protein Biosynthesis by the Ribosome.硫酯支持核糖体进行高效的蛋白质生物合成。
ACS Cent Sci. 2025 Jan 30;11(3):404-412. doi: 10.1021/acscentsci.4c01698. eCollection 2025 Mar 26.
4
Grignard Method for Preparing Thioesters from Esters and Its Application to One-Pot Synthesis of Ketones and Aldehydes.由酯制备硫酯的格氏方法及其在酮和醛一锅法合成中的应用。
ACS Omega. 2025 Feb 18;10(8):8462-8471. doi: 10.1021/acsomega.4c10622. eCollection 2025 Mar 4.
5
Optogenetics with Atomic Precision─A Comprehensive Review of Optical Control of Protein Function through Genetic Code Expansion.具有原子精度的光遗传学——通过遗传密码扩展对蛋白质功能进行光学控制的全面综述
Chem Rev. 2025 Feb 26;125(4):1663-1717. doi: 10.1021/acs.chemrev.4c00224. Epub 2025 Feb 10.
6
Activity and Biocatalytic Potential of an Indolylamide Generating Thioesterase.吲哚酰胺生成硫酯酶的活性和生物催化潜力。
Org Lett. 2024 Nov 1;26(43):9378-9382. doi: 10.1021/acs.orglett.4c03648. Epub 2024 Oct 21.
7
From Catalysis of Evolution to Evolution of Catalysis.从进化的催化作用到催化的进化。
Acc Chem Res. 2024 Nov 5;57(21):3081-3092. doi: 10.1021/acs.accounts.4c00196. Epub 2024 Oct 7.
8
Biochemical and crystallographic studies of L,D-transpeptidase 2 from Mycobacterium tuberculosis with its natural monomer substrate.结核分枝杆菌 L,D-转肽酶 2 及其天然单体底物的生化和晶体学研究。
Commun Biol. 2024 Sep 18;7(1):1173. doi: 10.1038/s42003-024-06785-3.
9
Stereoselective mechanochemical synthesis of thiomalonate Michael adducts via iminium catalysis by chiral primary amines.通过手性伯胺的亚胺催化实现硫代丙二酸酯迈克尔加成物的立体选择性机械化学合成。
Beilstein J Org Chem. 2024 Sep 12;20:2313-2322. doi: 10.3762/bjoc.20.198. eCollection 2024.
10
Internal Catalysis in Dynamic Hydrogels with Associative Thioester Cross-Links.具有缔合硫酯交联的动态水凝胶中的内催化作用。
ACS Macro Lett. 2024 May 21;13(5):621-626. doi: 10.1021/acsmacrolett.4c00245. Epub 2024 May 3.