Pal Samir Kumar, Peon Jorge, Zewail Ahmed H
Laboratory for Molecular Sciences, Arthur Amos Noyes Laboratory of Chemical Physics, California Institute of Technology, Pasadena, CA 91125, USA.
Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):1763-8. doi: 10.1073/pnas.042697899. Epub 2002 Feb 12.
Biological water at the interface of proteins is critical to their equilibrium structures and enzyme function and to phenomena such as molecular recognition and protein-protein interactions. To actually probe the dynamics of water structure at the surface, we must examine the protein itself, without disrupting the native structure, and the ultrafast elementary processes of hydration. Here we report direct study, with femtosecond resolution, of the dynamics of hydration at the surface of the enzyme protein Subtilisin Carlsberg, whose single Trp residue (Trp-113) was used as an intrinsic biological fluorescent probe. For the protein, we observed two well separated dynamical solvation times, 0.8 ps and 38 ps, whereas in bulk water, we obtained 180 fs and 1.1 ps. We also studied a covalently bonded probe at a separation of approximately 7 A and observed the near disappearance of the 38-ps component, with solvation being practically complete in (time constant) 1.5 ps. The degree of rigidity of the probe (anisotropy decay) and of the water environment (protein vs. micelle) was also studied. These results show that hydration at the surface is a dynamical process with two general types of trajectories, those that result from weak interactions with the selected surface site, giving rise to bulk-type solvation (approximately 1 ps), and those that have a stronger interaction, enough to define a rigid water structure, with a solvation time of 38 ps, much slower than that of the bulk. At a distance of approximately 7 A from the surface, essentially all trajectories are bulk-type. The theoretical framework for these observations is discussed.
蛋白质界面处的生物水对于其平衡结构、酶功能以及诸如分子识别和蛋白质 - 蛋白质相互作用等现象至关重要。为了实际探测表面水结构的动力学,我们必须在不破坏天然结构的情况下研究蛋白质本身以及水合作用的超快基本过程。在此,我们报告了对卡尔伯格枯草杆菌蛋白酶表面水合动力学的直接研究,其单个色氨酸残基(Trp - 113)被用作内在生物荧光探针,分辨率达到飞秒级。对于该蛋白质,我们观察到两个明显分开的动态溶剂化时间,分别为0.8皮秒和38皮秒,而在 bulk 水中,我们得到的是180飞秒和1.1皮秒。我们还研究了一个共价连接的探针,其距离约为7埃,观察到38皮秒的成分几乎消失,溶剂化实际上在1.5皮秒(时间常数)内完成。我们还研究了探针的刚性程度(各向异性衰减)以及水环境(蛋白质与胶束)。这些结果表明,表面水合是一个具有两种一般轨迹类型的动态过程,一种是与选定表面位点的弱相互作用导致的,产生 bulk 型溶剂化(约1皮秒),另一种是具有更强相互作用的,足以定义一个刚性水结构,溶剂化时间为38皮秒,比 bulk 水慢得多。在距离表面约7埃处,基本上所有轨迹都是 bulk 型的。我们讨论了这些观察结果的理论框架。