Clore G Marius, Kuszewski John
Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0510, USA.
J Am Chem Soc. 2002 Mar 27;124(12):2866-7. doi: 10.1021/ja017712p.
The equilibrium angles and distributions of chi(1) rotamers for mobile surface side chains of the small, 63-residue, B1 domain of protein L have been calculated from the static crystal structure by rigid body/torsion angle simulated annealing using a torsion angle database potential of mean force and compared to those deduced by Monte Carlo analysis of side chain residual dipolar couplings measured in solution. Good agreement between theory and experiment is observed, indicating that for side chains undergoing rotamer averaging that is fast on the chemical shift time scale, the equilibrium angles and distribution of chi(1) rotamers are largely determined by the backbone phi/psi torsion angles.
已通过使用平均力扭转角数据库势的刚体/扭转角模拟退火方法,从静态晶体结构计算出了包含63个残基的小蛋白L的B1结构域可移动表面侧链的χ(1)旋转异构体的平衡角度和分布,并将其与通过溶液中侧链残余偶极耦合的蒙特卡罗分析推导得出的结果进行了比较。理论与实验之间观察到了良好的一致性,这表明对于在化学位移时间尺度上快速进行旋转异构体平均的侧链,χ(1)旋转异构体的平衡角度和分布在很大程度上由主链φ/ψ扭转角决定。