Filikov Anton V, Hayes Robert J, Luo Peizhi, Stark Diane M, Chan Cheryl, Kundu Anirban, Dahiyat Bassil I
Xencor, Inc., Monrovia, California 91016, USA.
Protein Sci. 2002 Jun;11(6):1452-61. doi: 10.1110/ps.3500102.
Recombinant human growth hormone (hGH) is used worldwide for the treatment of pediatric hypopituitary dwarfism and in children suffering from low levels of hGH. It has limited stability in solution, and because of poor oral absorption, is administered by injection, typically several times a week. Development has therefore focused on more stable or sustained-release formulations and alternatives to injectable delivery that would increase bioavailability and make it easier for patients to use. We redesigned hGH computationally to improve its thermostability. A more stable variant of hGH could have improved pharmacokinetics or enhanced shelf-life, or be more amenable to use in alternate delivery systems and formulations. The computational design was performed using a previously developed combinatorial optimization algorithm based on the dead-end elimination theorem. The algorithm uses an empirical free energy function for scoring designed sequences. This function was augmented with a term that accounts for the loss of backbone and side-chain conformational entropy. The weighting factors for this term, the electrostatic interaction term, and the polar hydrogen burial term were optimized by minimizing the number of mutations designed by the algorithm relative to wild-type. Forty-five residues in the core of the protein were selected for optimization with the modified potential function. The proteins designed using the developed scoring function contained six to 10 mutations, showed enhancement in the melting temperature of up to 16 degrees C, and were biologically active in cell proliferation studies. These results show the utility of our free energy function in automated protein design.
重组人生长激素(hGH)在全球范围内用于治疗小儿垂体性侏儒症以及hGH水平较低的儿童。它在溶液中的稳定性有限,且由于口服吸收差,通常通过注射给药,一般每周数次。因此,研发工作集中在更稳定或缓释的制剂以及可替代注射给药的方式上,这些方式将提高生物利用度并使患者使用起来更加方便。我们通过计算重新设计了hGH以提高其热稳定性。hGH的更稳定变体可能具有改善的药代动力学或延长的保质期,或者更适合用于替代给药系统和制剂。计算设计是使用先前基于死端消除定理开发的组合优化算法进行的。该算法使用经验自由能函数对设计的序列进行评分。这个函数增加了一个考虑主链和侧链构象熵损失的项。通过最小化算法相对于野生型设计的突变数量,对该项、静电相互作用项和极性氢埋藏项的加权因子进行了优化。选择蛋白质核心中的45个残基用修改后的势能函数进行优化。使用开发的评分函数设计的蛋白质含有6至10个突变,其解链温度提高了高达16摄氏度,并且在细胞增殖研究中具有生物活性。这些结果表明了我们的自由能函数在自动化蛋白质设计中的实用性。