Barnakov Alexander, Altenbach Christian, Barnakova Ludmila, Hubbell Wayne L, Hazelbauer Gerald L
School of Molecular Biosciences, Washington State University, Pullman, Washington 99164-4660, USA.
Protein Sci. 2002 Jun;11(6):1472-81. doi: 10.1110/ps.0202502.
We used site-directed spin labeling and electron paramagnetic resonance spectroscopy to investigate dynamics and helical packing in the four-helix transmembrane domain of the homodimeric bacterial chemoreceptor Trg. We focused on the first transmembrane helix, TM1, particularly on the nine-residue sequence nearest the periplasm, because patterns of disulfide formation between introduced cysteines had identified that segment as the region of closest approach among neighboring transmembrane helices. Along this sequence, mobility and accessibility of the introduced spin label were characteristic of loosely packed or solvent-exposed side chains. This was also the case for eight additional positions around the circumference and along the length of TM1. For the continuous nine-residue sequence near the periplasm, mobility and accessibility varied only modestly as a function of position. We conclude that side chains of TM1 that face the interior of the four-helix domain interact with neighboring helices but dynamic movement results in loose packing. Compared to transmembrane segments of other membrane proteins reconstituted into lipid bilayers and characterized by site-directed spin labeling, TM1 of chemoreceptor Trg is the most dynamic and loosely packed. A dynamic, loosely packed chemoreceptor domain can account for many experimental observations about the transmembrane domains of chemoreceptors.
我们使用定点自旋标记和电子顺磁共振光谱法来研究同二聚体细菌化学感受器Trg的四螺旋跨膜结构域中的动力学和螺旋堆积。我们聚焦于第一个跨膜螺旋TM1,尤其是最靠近周质的九个残基序列,因为引入的半胱氨酸之间的二硫键形成模式已将该片段确定为相邻跨膜螺旋之间最接近的区域。沿着该序列,引入的自旋标记的流动性和可及性是松散堆积或暴露于溶剂的侧链的特征。在TM1的周长周围和长度方向上的另外八个位置也是如此。对于靠近周质的连续九个残基序列,流动性和可及性仅随位置有适度变化。我们得出结论,面向四螺旋结构域内部的TM1侧链与相邻螺旋相互作用,但动态运动会导致松散堆积。与重构到脂质双层中并通过定点自旋标记表征的其他膜蛋白的跨膜片段相比,化学感受器Trg的TM1是最具动态性且堆积最松散的。一个动态、松散堆积的化学感受器结构域可以解释关于化学感受器跨膜结构域的许多实验观察结果。