Vugmeyster Liliya, Trott Oleg, McKnight C James, Raleigh Daniel P, Palmer Arthur G
Department of Chemistry, SUNY Stony Brook, Stony Brook, NY 11794-3400, USA
J Mol Biol. 2002 Jul 19;320(4):841-54. doi: 10.1016/S0022-2836(02)00537-5.
(15)N spin relaxation experiments were used to measure the temperature-dependence of protein backbone conformational fluctuations in the thermostable helical subdomain, HP36, of the F-actin-binding headpiece domain of chicken villin. HP36 is the smallest domain of a naturally occurring protein that folds cooperatively to a compact native state. Spin-lattice, spin-spin, and heteronuclear nuclear Overhauser effect relaxation data for backbone amide (15)N spins were collected at five temperatures in the range of 275-305 K. The data were analyzed using a model-free formalism to determine generalized order parameters, S, that describe the distribution of N-H bond vector orientations in a molecular reference frame. A novel parameter, Lambda=dln(1-S)/dln T is introduced to characterize the temperature-dependence of S. An average value of Lambda=4.5 is obtained for residues in helical conformations in HP36. This value of Lambda is not reproduced by model potential energy functions commonly used to parameterize S. The maximum entropy principle was used to derive a new model potential function that reproduces both S and Lambda. Contributions to the entropy, S(r), and heat capacity, C(r)(p), from reorientational conformational fluctuations were analyzed using this potential energy function. Values of S(r) show a qualitative dependence on S similar to that obtained for the diffusion-in-a-cone model; however, quantitative differences of up to 0.5k, in which k is the Boltzmann constant, are observed. Values of C(r)(p) approach zero for small values of S and approach k for large values of S; the largest values of C(r)(p) are predicted to occur for intermediate values of S. The results suggest that backbone dynamics, as probed by relaxation measurements, make very little contribution to the heat capacity difference between folded and unfolded states for HP36.
利用(15)N自旋弛豫实验来测量鸡绒毛蛋白F-肌动蛋白结合头部结构域的热稳定螺旋亚结构域HP36中蛋白质主链构象波动的温度依赖性。HP36是天然存在的蛋白质中最小的结构域,它协同折叠成紧密的天然状态。在275 - 305 K范围内的五个温度下收集了主链酰胺(15)N自旋的自旋晶格、自旋 - 自旋和异核Overhauser效应弛豫数据。使用无模型形式主义分析数据,以确定描述分子参考系中N - H键矢量取向分布的广义序参量S。引入了一个新参数Lambda = dln(1 - S)/dln T来表征S的温度依赖性。对于HP36中处于螺旋构象的残基,Lambda的平均值为4.5。这个Lambda值不能由通常用于参数化S的模型势能函数重现。利用最大熵原理推导了一个新的模型势能函数,该函数能重现S和Lambda。使用这个势能函数分析了重取向构象波动对熵S(r)和热容C(r)(p)的贡献。S(r)的值显示出对S的定性依赖性,类似于在锥形扩散模型中得到的结果;然而,观察到高达0.5k的定量差异,其中k是玻尔兹曼常数。对于小的S值,C(r)(p)的值接近零,对于大的S值接近k;预计C(r)(p)的最大值出现在S的中间值处。结果表明,通过弛豫测量探测到的主链动力学对HP36折叠态和未折叠态之间的热容差贡献很小。