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肌联蛋白类似围棋模型中的折叠与拉伸。

Folding and stretching in a Go-like model of titin.

作者信息

Cieplak Marek, Hoang Trinh Xuan, Robbins Mark O

机构信息

Department of Physics and Astronomy, The Johns Hopkins University, Baltimore, Maryland, USA.

出版信息

Proteins. 2002 Oct 1;49(1):114-24. doi: 10.1002/prot.10087.

Abstract

Mechanical stretching of the I27 domain of titin and of its double and triple repeats are studied through molecular dynamics simulations of a Go-like model with Lennard-Jones contact interactions. We provide a thorough characterization of the system and correlate the sequencing of the folding and unraveling events with each other and with the contact order. The roles of cantilever stiffness and pulling rate are studied. Unraveling of tandem titin structures has a serial nature. The force-displacement curves in this coarse-grained model are similar to those obtained through all atom calculations.

摘要

通过具有 Lennard-Jones 接触相互作用的类 Go 模型的分子动力学模拟,研究了肌联蛋白 I27 结构域及其双重复和三重复的机械拉伸。我们对该系统进行了全面表征,并将折叠和解开事件的顺序相互关联,以及与接触顺序相关联。研究了悬臂刚度和拉伸速率的作用。串联肌联蛋白结构的解开具有序列性质。在这个粗粒度模型中的力-位移曲线与通过全原子计算得到的曲线相似。

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