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实验和计算生物液晶特性分析:单分子生物分析综述

Experimental and computational characterization of biological liquid crystals: a review of single-molecule bioassays.

机构信息

Department of Mechanical Engineering, Korea University, Seoul 136-701, Korea.

Department of Radiology, College of Medicine, Yonsei University, Seoul 120-752, Korea.

出版信息

Int J Mol Sci. 2009 Sep 10;10(9):4009-4032. doi: 10.3390/ijms10094009.

Abstract

Quantitative understanding of the mechanical behavior of biological liquid crystals such as proteins is essential for gaining insight into their biological functions, since some proteins perform notable mechanical functions. Recently, single-molecule experiments have allowed not only the quantitative characterization of the mechanical behavior of proteins such as protein unfolding mechanics, but also the exploration of the free energy landscape for protein folding. In this work, we have reviewed the current state-of-art in single-molecule bioassays that enable quantitative studies on protein unfolding mechanics and/or various molecular interactions. Specifically, single-molecule pulling experiments based on atomic force microscopy (AFM) have been overviewed. In addition, the computational simulations on single-molecule pulling experiments have been reviewed. We have also reviewed the AFM cantilever-based bioassay that provides insight into various molecular interactions. Our review highlights the AFM-based single-molecule bioassay for quantitative characterization of biological liquid crystals such as proteins.

摘要

定量理解蛋白质等生物液晶的力学行为对于深入了解它们的生物学功能至关重要,因为有些蛋白质具有显著的力学功能。最近,单分子实验不仅允许定量表征蛋白质的力学行为,如蛋白质解折叠力学,还可以探索蛋白质折叠的自由能景观。在这项工作中,我们综述了目前用于定量研究蛋白质解折叠力学和/或各种分子相互作用的单分子生物测定方法的最新进展。具体而言,综述了基于原子力显微镜 (AFM) 的单分子拉伸实验。此外,还综述了单分子拉伸实验的计算模拟。我们还综述了基于 AFM 悬臂的生物测定方法,该方法提供了对各种分子相互作用的深入了解。我们的综述强调了基于 AFM 的单分子生物测定方法在定量表征蛋白质等生物液晶方面的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2131/2769145/d293cf89e4eb/ijms-10-04009f1.jpg

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