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哪些因素会影响细胞色素P450氧化反应的区域选择性?模型反应中烯丙基羟基化和双键环氧化的密度泛函理论研究。

What factors affect the regioselectivity of oxidation by cytochrome p450? A DFT study of allylic hydroxylation and double bond epoxidation in a model reaction.

作者信息

de Visser Sam P, Ogliaro François, Sharma Pankaz K, Shaik Sason

机构信息

Department of Organic Chemistry, The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel.

出版信息

J Am Chem Soc. 2002 Oct 2;124(39):11809-26. doi: 10.1021/ja026872d.

Abstract

Epoxidation (C=C) vis-à-vis allylic hydroxylation (C-H) reactions of propene with a model compound I (Cpd I) of the enzyme cytochrome P450 were studied using B3LYP density functional theory. Potential energy profiles and kinetic isotope effects (KIE) were calculated. The interactions in the protein pocket were mimicked by adding two external NH- - -S hydrogen bonds to the thiolate ligand and by introducing a nonpolar medium (with a dielectric constant, epsilon = 5.7) that can exert a polarization effect on the reacting species. A two-state reactivity (TSR) with high-spin (HS) and low-spin (LS) states were located for both processes (Ogliaro, F.; Harris, N.; Cohen, S.; Filatov, M.; de Visser, S. P.; Shaik, S. J. Am. Chem. Soc. 2000, 122, 8977-8989. de Visser, S. P.; Ogilaro, F.; Harris, N.; Shaik, S. J. Am. Chem. Soc. 2001, 123, 3037-3047). The HS processes were found to be stepwise, whereas the LS processes were characterized as nonsynchronous but effectively concerted pathways. The computed KIE for C-H hydroxylation with and without tunneling corrections are large (>7), and they support the assignment of the corresponding transition states as hydrogen-abstraction species (Groves, J. T.; Han, Y.-Z. In Cytochrome P450: Structures, Mechanism and Biochemistry, 2nd ed.; Ortiz de Montellano, P. R., Ed.; Plenum Press: New York, 1995; Chapter 1; pp 3-48). In the gas phase, epoxidation is energetically favorable by 3.4 kcal mol(-1). Inclusion of zero-point energy reduces this difference but still predicts C=C/C-H > 1. Environmental effects were found to have major impact on the C=C/C-H ratio as well as on the stereoselectivity of the processes. Thus, two NH- - -S hydrogen bonds away from the reaction center reverse the regioselectivity and prefer hydroxylation, namely, C=C/C-H <1. The polarity of the medium further accentuates the trend and leads to a change by 2 orders of magnitude in the regioselectivity, C=C/C-H << 1. Furthermore, since the environmental interactions prefer the LS over the HS reactions, both hydroxylation and epoxidation processes are rendered more stereoselective, again by 2 orders of magnitude. It follows, therefore, that Cpd I is a chameleon oxidant (Ogliaro, F.; Cohen, S.; de Visser, S. P.; Shaik, S. J. Am. Chem. Soc. 2000, 122, 12892-12893; Ogliaro, F.; de Visser, S. P.; Cohen, S.; Kaneti, J.; Shaik, S. Chembiochem. 2001, 2, 848-851; Ogliaro, F.; de Visser, S. P.; Groves, J. T.; Shaik, S. Angew. Chem., Int. Ed. 2001, 40, 2874-2878) that tunes its reactivity and selectivity patterns in response to the protein environment in which it is accommodated. A valence bond (VB) model, akin to "redox mesomerism" (Bernadou, J.; Fabiano, A.-S.; Robert, A.; Meunier, B. J. Am. Chem. Soc. 1994, 116, 9375-9376), is constructed and enables the description of a chameleon transition state. It shows that the good donor ability of the thiolate ligand and the acceptor ability of the iron porphyrin create mixed-valent situations that endow the transition state with a great sensitivity to external perturbations as in the protein pocket. The model is used to discuss the computed results and to relate them to experimental findings.

摘要

采用B3LYP密度泛函理论研究了丙烯与细胞色素P450酶的模型化合物I(化合物I)的环氧化(C=C)与烯丙基羟基化(C-H)反应。计算了势能剖面和动力学同位素效应(KIE)。通过在硫醇盐配体上添加两个外部NH---S氢键以及引入可对反应物种施加极化效应的非极性介质(介电常数ε = 5.7)来模拟蛋白质口袋中的相互作用。对于这两个过程都定位了具有高自旋(HS)和低自旋(LS)状态的双态反应性(TSR)(奥利亚罗,F.;哈里斯,N.;科恩,S.;菲拉托夫,M.;德维瑟,S.P.;谢克,S.《美国化学会志》2000年,122卷,8977 - 8989页。德维瑟,S.P.;奥吉拉罗,F.;哈里斯,N.;谢克,S.《美国化学会志》2001年,123卷,3037 - 3047页)。发现HS过程是分步的,而LS过程的特征是非同步但有效的协同途径。计算得到的有和没有隧穿校正的C-H羟基化的KIE都很大(>7),并且它们支持将相应的过渡态指定为氢抽取物种(格罗夫斯,J.T.;韩,Y.-Z.《细胞色素P450:结构、机制和生物化学》,第2版;奥尔蒂斯·德·蒙特利亚诺,P.R.编;普伦纽姆出版社:纽约,1995年;第1章;第3 - 48页)。在气相中,环氧化在能量上有利3.4千卡摩尔⁻¹。包含零点能会缩小这种差异,但仍然预测C=C/C-H > 1。发现环境效应对C=C/C-H比值以及过程的立体选择性有重大影响。因此,远离反应中心的两个NH---S氢键会反转区域选择性并倾向于羟基化,即C=C/C-H <1。介质的极性进一步加剧了这种趋势,并导致区域选择性变化2个数量级,C=C/C-H << 1。此外,由于环境相互作用更倾向于LS反应而非HS反应,羟基化和环氧化过程都变得更具立体选择性,同样也是2个数量级。因此,化合物I是一种变色龙氧化剂(奥利亚罗,F.;科恩,S.;德维瑟,S.P.;谢克,S.《美国化学会志》2000年,122卷,12892 - 12893页;奥利亚罗,F.;德维瑟,S.P.;科恩,S.;卡内蒂,J.;谢克,S.《化学生物化学》2001年,2卷,848 - 851页;奥利亚罗,F.;德维瑟,S.P.;格罗夫斯,J.T.;谢克,S.《德国应用化学》2001年,40卷,2874 - 2878页),它会根据其所处的蛋白质环境调整其反应性和选择性模式。构建了一个类似于“氧化还原互变异构”的价键(VB)模型(贝尔纳杜,J.;法比亚诺,A.-S.;罗伯特,A.;梅尼埃,B.《美国化学会志》1994年,116卷,9375 - 9376页),并能够描述变色龙过渡态。结果表明硫醇盐配体的良好给体能力和铁卟啉的受体能力创造了混合价态情况,这使得过渡态对蛋白质口袋中的外部扰动具有很大的敏感性。该模型用于讨论计算结果并将它们与实验发现相关联。

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