Cingolani Gino, Moore Sean D, Prevelige Peter E, Johnson John E
Department of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
J Struct Biol. 2002 Jul;139(1):46-54. doi: 10.1016/s1047-8477(02)00512-9.
Portal proteins are components of large oligomeric dsDNA pumps connecting the icosahedral capsid of tailed bacteriophages to the tail. Prior to the tail attachment, dsDNA is actively pumped through a central cavity formed by the subunits. We have studied the portal protein of bacteriophage P22, which is the largest connector characterized among the tailed bacteriophages. The molecular weight of the monomer is 82.7 kDa, and it spontaneously assembles into an oligomeric structure of approximately 1.0 MDa. Here we present a preliminary biochemical and crystallographic characterization of this large macromolecular complex. The main difficulties related to the crystallization of P22 portal protein lay in the intrinsic dynamic nature of the portal oligomer. Recombinant connectors assembled from portal monomers expressed in Escherichia coli form rings of different stoichiometry in solution, which cannot be separated on the basis of their size. To overcome this intrinsic heterogeneity we devised a biochemical purification that separates different ring populations on the basis of their charge. Small ordered crystals were grown from drops containing a high concentration of the kosmotropic agent tert-butanol and used for data collection. A preliminary crystallographic analysis to 7.0-A resolution revealed that the P22 portal protein crystallized in space group I4 with unit cell dimensions a=b=409.4A, c=260.4A. This unit cell contains a total of eight connectors. Analysis of the noncrystallographic symmetry by the self-rotation function unambiguously confirmed that bacteriophage P22 portal protein is a dodecamer with a periodicity of 30 degrees. The cryo-EM reconstruction of the dodecahedral bacteriophage T3 portal protein will be used as a model to initiate phase extension and structure determination.
门户蛋白是大型寡聚双链DNA泵的组成部分,这些泵将有尾噬菌体的二十面体衣壳与尾部相连。在尾部附着之前,双链DNA通过由亚基形成的中央腔被主动泵入。我们研究了噬菌体P22的门户蛋白,它是有尾噬菌体中特征最为明确的最大连接体。单体的分子量为82.7 kDa,它能自发组装成约1.0 MDa的寡聚结构。在此,我们展示了这种大型高分子复合物的初步生化和晶体学特征。与P22门户蛋白结晶相关的主要困难在于门户寡聚体固有的动态性质。由在大肠杆菌中表达的门户单体组装而成的重组连接体在溶液中形成不同化学计量比的环,无法根据其大小进行分离。为了克服这种内在的异质性,我们设计了一种生化纯化方法,根据电荷分离不同的环群体。从含有高浓度促溶剂叔丁醇的液滴中生长出小的有序晶体,并用于数据收集。到7.0 Å分辨率的初步晶体学分析表明,P22门户蛋白以空间群I4结晶,晶胞尺寸a = b = 409.4 Å,c = 260.4 Å。这个晶胞总共包含八个连接体。通过自旋转函数对非晶体学对称性的分析明确证实,噬菌体P22门户蛋白是一个十二聚体,周期性为30度。十二面体噬菌体T3门户蛋白的冷冻电镜重建将用作模型来启动相位扩展和结构测定。