Zardoya Rafael, Ding Xiaodong, Kitagawa Yoshichika, Chrispeels Maarten J
Departamento de Biodiversidad y Biologia Evolutiva, Museo Nacional de Ciencias Naturales, José Gutierrez Abascal 2, 28006 Madrid, Spain.
Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):14893-6. doi: 10.1073/pnas.192573799. Epub 2002 Oct 23.
Gene-family evolution mostly relies on gene duplication coupled with functional diversification of gene products. However, other evolutionary mechanisms may also be important in generating protein diversity. The ubiquitous membrane intrinsic protein (MIP) gene family is an excellent model system to search for such alternative evolutionary mechanisms. MIPs are proteins that transport water, glycerol, and small solutes across cell membranes in all living organisms. We reconstructed the molecular phylogeny of MIPs based on amino acid sequence data by using neighbor-joining, maximum-likelihood, and Bayesian methods of phylogenetic inference. The recovered trees show an early and distinct separation of water and glycerol transporters, i.e., aquaporins (AQPs), and aquaglyceroporins. The latter are absent from plants. As expected, gene duplication and functional diversification account for most of the diversity of animal and plant members of the family. However, in contrast to this model, we find that the sister group of plant glycerol transporters are bacterial AQPs. This relationship suggests first that plant glycerol transporters may resulted from a single event of horizontal gene transfer from bacteria, which we have estimated to have occurred approximately 1,200 million years ago, at the origin of plants, and second that bacterial AQPs were likely recruited to transport glycerol in plants because of their absence of aquaglyceroporins. This striking example of adaptive evolution at the molecular level was demonstrated further by finding convergent or parallel replacements at particular amino acid positions related to water- and glycerol-transporting specificity.
基因家族的进化主要依赖于基因复制以及基因产物的功能多样化。然而,其他进化机制在产生蛋白质多样性方面可能也很重要。无处不在的膜内在蛋白(MIP)基因家族是寻找此类替代进化机制的一个极佳模型系统。MIP是在所有生物中跨细胞膜运输水、甘油和小溶质的蛋白质。我们通过使用邻接法、最大似然法和贝叶斯系统发育推断方法,基于氨基酸序列数据重建了MIP的分子系统发育。重建的树状图显示水通道蛋白(AQP)和水甘油通道蛋白这两种水和甘油转运蛋白早期就有明显分化。植物中不存在后者。正如预期的那样,基因复制和功能多样化解释了该家族动植物成员的大部分多样性。然而,与这种模式不同的是,我们发现植物甘油转运蛋白的姐妹类群是细菌AQP。这种关系首先表明植物甘油转运蛋白可能源于一次从细菌水平基因转移的单一事件,我们估计该事件大约发生在12亿年前,即植物起源之时;其次表明细菌AQP可能由于植物缺乏水甘油通道蛋白而被招募来在植物中运输甘油。在与水和甘油运输特异性相关的特定氨基酸位置发现趋同或平行替换,进一步证明了这种分子水平上适应性进化的显著例子。