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硫循环酶催化硫代硫酸盐氧化的结构基础。

Structural basis for the oxidation of thiosulfate by a sulfur cycle enzyme.

作者信息

Bamford Vicki A, Bruno Stefano, Rasmussen Tim, Appia-Ayme Corinne, Cheesman Myles R, Berks Ben C, Hemmings Andrew M

机构信息

Centre for Metalloprotein Spectroscopy and Biology, School of Biological Sciences and School of Chemical Sciences, University of East Anglia, Norwich NR4 7TJ, UK.

出版信息

EMBO J. 2002 Nov 1;21(21):5599-610. doi: 10.1093/emboj/cdf566.

DOI:10.1093/emboj/cdf566
PMID:12411478
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC131063/
Abstract

Reduced inorganic sulfur compounds are utilized by many bacteria as electron donors to photosynthetic or respiratory electron transport chains. This metabolism is a key component of the biogeochemical sulfur cycle. The SoxAX protein is a heterodimeric c-type cytochrome involved in thiosulfate oxidation. The crystal structures of SoxAX from the photosynthetic bacterium Rhodovulum sulfidophilum have been solved at 1.75 A resolution in the oxidized state and at 1.5 A resolution in the dithionite-reduced state, providing the first structural insights into the enzymatic oxidation of thiosulfate. The SoxAX active site contains a haem with unprecedented cysteine persulfide (cysteine sulfane) coordination. This unusual post-translational modification is also seen in sulfurtransferases such as rhodanese. Intriguingly, this enzyme shares further active site characteristics with SoxAX such as an adjacent conserved arginine residue and a strongly positive electrostatic potential. These similarities have allowed us to suggest a catalytic mechanism for enzymatic thiosulfate oxidation. The atomic coordinates and experimental structure factors have been deposited in the PDB with the accession codes 1H31, 1H32 and 1H33.

摘要

许多细菌利用还原态无机硫化合物作为光合或呼吸电子传递链的电子供体。这种代谢是生物地球化学硫循环的关键组成部分。SoxAX蛋白是一种参与硫代硫酸盐氧化的异二聚体c型细胞色素。已解析出嗜硫红假单胞菌光合细菌中SoxAX在氧化态下1.75 Å分辨率和连二亚硫酸盐还原态下1.5 Å分辨率的晶体结构,首次为硫代硫酸盐的酶促氧化提供了结构见解。SoxAX活性位点包含一个血红素,其具有前所未有的半胱氨酸过硫化物(半胱氨酸硫烷)配位。这种不寻常的翻译后修饰在硫转移酶如硫氰酸酶中也可见。有趣的是,这种酶与SoxAX具有进一步的活性位点特征,如相邻的保守精氨酸残基和强正静电势。这些相似性使我们能够提出酶促硫代硫酸盐氧化的催化机制。原子坐标和实验结构因子已存入蛋白质数据库,登录号为1H31、1H32和1H33。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Raster3D: photorealistic molecular graphics.Raster3D:逼真的分子图形。
Methods Enzymol. 1997;277:505-24. doi: 10.1016/s0076-6879(97)77028-9.
3
Free R value: a novel statistical quantity for assessing the accuracy of crystal structures.自由R值:一种用于评估晶体结构准确性的新型统计量。
Nature. 1992 Jan 30;355(6359):472-5. doi: 10.1038/355472a0.
4
The CCP4 suite: programs for protein crystallography.CCP4软件包:用于蛋白质晶体学的程序。
Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3. doi: 10.1107/S0907444994003112.
5
Crystal structure of the yeast cytochrome bc1 complex with its bound substrate cytochrome c.酵母细胞色素bc1复合物与其结合底物细胞色素c的晶体结构。
Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2800-5. doi: 10.1073/pnas.052704699.
6
Cytochrome complex essential for photosynthetic oxidation of both thiosulfate and sulfide in Rhodovulum sulfidophilum.细胞色素复合物对嗜硫小红卵菌中硫代硫酸盐和硫化物的光合氧化至关重要。
J Bacteriol. 2001 Oct;183(20):6107-18. doi: 10.1128/JB.183.20.6107-6118.2001.
7
Novel heme ligation in a c-type cytochrome involved in thiosulfate oxidation: EPR and MCD of SoxAX from Rhodovulum sulfidophilum.参与硫代硫酸盐氧化的c型细胞色素中的新型血红素连接:嗜硫小红卵菌SoxAX的电子顺磁共振和磁圆二色性
Biochemistry. 2001 Sep 4;40(35):10562-9. doi: 10.1021/bi0100081.
8
The cysteine residue of the SoxY protein as the active site of protein-bound sulfur oxidation of Paracoccus pantotrophus GB17.嗜甲基副球菌GB17中作为蛋白质结合硫氧化活性位点的SoxY蛋白的半胱氨酸残基。
FEBS Lett. 2001 Aug 17;503(2-3):168-72. doi: 10.1016/s0014-5793(01)02727-2.
9
Structure of human cystathionine beta-synthase: a unique pyridoxal 5'-phosphate-dependent heme protein.人胱硫醚β-合酶的结构:一种独特的依赖于磷酸吡哆醛的血红素蛋白。
EMBO J. 2001 Aug 1;20(15):3910-6. doi: 10.1093/emboj/20.15.3910.
10
Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17.嗜甲基副球菌GB17中sox基因簇的新基因、黄素蛋白SoxF的诱变及通用硫氧化系统的证据
J Bacteriol. 2001 Aug;183(15):4499-508. doi: 10.1128/JB.183.15.4499-4508.2001.