Grabarczyk Daniel B, Chappell Paul E, Eisel Bianca, Johnson Steven, Lea Susan M, Berks Ben C
From the Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom and.
the Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, United Kingdom.
J Biol Chem. 2015 Apr 3;290(14):9209-21. doi: 10.1074/jbc.M114.618025. Epub 2015 Feb 11.
Thiosulfate dehydrogenase (TsdA) catalyzes the oxidation of two thiosulfate molecules to form tetrathionate and is predicted to use an unusual cysteine-ligated heme as the catalytic cofactor. We have determined the structure of Allochromatium vinosum TsdA to a resolution of 1.3 Å. This structure confirms the active site heme ligation, identifies a thiosulfate binding site within the active site cavity, and reveals an electron transfer route from the catalytic heme, through a second heme group to the external electron acceptor. We provide multiple lines of evidence that the catalytic reaction proceeds through the intermediate formation of a S-thiosulfonate derivative of the heme cysteine ligand: the cysteine is reactive and is accessible to electrophilic attack; cysteine S-thiosulfonate is formed by the addition of thiosulfate or following the reverse reaction with tetrathionate; the S-thiosulfonate modification is removed through catalysis; and alkylating the cysteine blocks activity. Active site amino acid residues required for catalysis were identified by mutagenesis and are inferred to also play a role in stabilizing the S-thiosulfonate intermediate. The enzyme SoxAX, which catalyzes the first step in the bacterial Sox thiosulfate oxidation pathway, is homologous to TsdA and can be inferred to use a related catalytic mechanism.
硫代硫酸盐脱氢酶(TsdA)催化两个硫代硫酸盐分子氧化形成连四硫酸盐,并预计使用一种不寻常的半胱氨酸连接血红素作为催化辅因子。我们已将嗜酒色杆菌TsdA的结构解析至1.3 Å的分辨率。该结构证实了活性位点血红素的连接方式,确定了活性位点腔内的一个硫代硫酸盐结合位点,并揭示了一条从催化血红素经第二个血红素基团到外部电子受体的电子传递途径。我们提供了多条证据表明催化反应通过血红素半胱氨酸配体的S-硫代磺酸盐衍生物的中间形成过程进行:半胱氨酸具有反应性且易受亲电攻击;半胱氨酸S-硫代磺酸盐通过添加硫代硫酸盐或与连四硫酸盐发生逆反应形成;S-硫代磺酸盐修饰通过催化作用被去除;对半胱氨酸进行烷基化会阻断活性。通过诱变确定了催化所需的活性位点氨基酸残基,并推断它们在稳定S-硫代磺酸盐中间体中也发挥作用。催化细菌硫氧化途径第一步的酶SoxAX与TsdA同源,可以推断其使用相关的催化机制。